Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1214
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0918 + 9043949-9045625                                           32   0.38 
01_06_0280 + 28129750-28129868,28130677-28131145,28133605-281338...    29   2.7  
02_05_0922 - 32742863-32742958,32743081-32743136,32743253-327433...    28   8.2  

>08_01_0918 + 9043949-9045625
          Length = 558

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -1

Query: 382 GSGGSEMTYLGRRRLLYIVSAGSGM*LPAATMRGFSCRTALSNGAATPTGDTDG-LLSPG 206
           G GG         R L  V+  S    PAA + GF+     S+GA TPT  T G L+   
Sbjct: 53  GGGGGASIIRSLNRALAAVARDS----PAAAVSGFNRMARSSDGAVTPTLHTYGILIGCC 108

Query: 205 CHGGR 191
           C  GR
Sbjct: 109 CRAGR 113


>01_06_0280 +
           28129750-28129868,28130677-28131145,28133605-28133802,
           28134168-28134412,28134749-28134907,28135491-28135578,
           28135983-28136264
          Length = 519

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = -2

Query: 324 PQDRECSYRRPR*EGSRVVPLYRMAQRRRLAILMDS*VQVVMEVDVPDESRSSDGYPHGG 145
           P D + + RR R E    +PL     R+ L  +    V+V  +VD+ + +R ++GY  G 
Sbjct: 389 PWDIDEALRR-RLEKRIYIPLPNFESRKALININLKTVEVATDVDIDEVARRTEGY-SGD 446

Query: 144 DGYNVVR 124
           D  NV R
Sbjct: 447 DLTNVCR 453


>02_05_0922 -
           32742863-32742958,32743081-32743136,32743253-32743382,
           32743768-32743849,32744038-32744227,32744290-32744369,
           32744769-32744985,32745740-32745923
          Length = 344

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 216 KSP-SVSPVGVAAPFDKAVRHENPLIVAAGNYIPDPADTM*SSRRRPKYVISDPP 377
           K+P S +P G AAP+ +  R ++   VAA   I D  D + +  R P  ++  PP
Sbjct: 26  KAPLSSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPP 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,602,907
Number of Sequences: 37544
Number of extensions: 410209
Number of successful extensions: 1287
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)