Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1214
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81086-4|CAB03117.1|  342|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical protein
            F15D4.1 protein.
          Length = 1529

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 271  DTRTLSSWPPVTT---FPILRTQCKAVDVAPNTSF-RILPI 381
            DTR L+ W  +     FP+L  QC+ V  A   +F R++P+
Sbjct: 888  DTRYLNGWATLLAPVIFPLLADQCETVRDAAGEAFRRLIPV 928


>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical protein
            F15D4.1 protein.
          Length = 1529

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 271  DTRTLSSWPPVTT---FPILRTQCKAVDVAPNTSF-RILPI 381
            DTR L+ W  +     FP+L  QC+ V  A   +F R++P+
Sbjct: 888  DTRYLNGWATLLAPVIFPLLADQCETVRDAAGEAFRRLIPV 928


>Z81086-4|CAB03117.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B6.4 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -3

Query: 164 TAIPMVATATTLCARPLFCIHAKYAGRFALSRRGIQFFTRKGSSRSRK 21
           T++PMVA A   CA+    +HAK   +   S+      + +G+S+S K
Sbjct: 53  TSLPMVA-AIAFCAKNRKTVHAKNKNKNKSSKSAKSSKSTRGASKSGK 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,770,470
Number of Sequences: 27780
Number of extensions: 305376
Number of successful extensions: 797
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)