Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1214
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.52 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.4  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -3

Query: 185 LTNHGAPTAIPMVATATTLCARPLFCIH--AKYAGRFALSRRGIQFFTRKGSSRSRKPPV 12
           +++H A   + ++     +C  P FC++    Y  +  +S R  Q  T  G S S   P+
Sbjct: 265 VSDHKAAITVGVIMGVFLICWVPFFCVNIVTSYC-KTCISGRAFQVLTWLGYSNSAFNPI 323


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 575 LTRTLARAVFAESTTGSER 519
           LT  LAR  F ++TTG ER
Sbjct: 340 LTPKLARKQFQKNTTGLER 358


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +3

Query: 213 LKSPSVSPVGVAAPFDKAVRHENPLIVAAGNYIPDPADT 329
           L  P   P G    F   +   NPL V  G  IP+ + T
Sbjct: 625 LSLPKGQPQGFPLQFLVVISSSNPLNVPYGPVIPEQSLT 663


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 275 VSYRFIEWRSDADW 234
           +SY F  WR + DW
Sbjct: 349 LSYAFSVWRMEDDW 362


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 566 TLARAVFAESTTGSERRPTGRSGERLSRLC 477
           TLA  +     +  E RP G +G R S  C
Sbjct: 209 TLADQIKNGIVSPQEERPKGINGRRASLFC 238


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 566 TLARAVFAESTTGSERRPTGRSGERLSRLC 477
           TLA  +     +  E RP G +G R S  C
Sbjct: 204 TLADQIKNGIVSPQEERPKGINGRRASLFC 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,802
Number of Sequences: 438
Number of extensions: 3898
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)