Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1214
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (...    30   1.3  
At3g19895.1 68416.m02519 expressed protein                             28   5.2  
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1...    28   6.8  
At4g08370.1 68417.m01382 proline-rich extensin-like family prote...    27   9.0  
At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related conta...    27   9.0  
At3g28450.1 68416.m03554 leucine-rich repeat transmembrane prote...    27   9.0  

>At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase
           (CKI1) identical to GB:D87545
          Length = 1122

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 351 GDVDCFTLCPQDRECSYRRPR*EGSRVVPLYRMAQRRRL 235
           G ++   L P+   C    P+ EGSRVV L +  +RRR+
Sbjct: 708 GSMNIRNLSPRFNNCLSSSPKQEGSRVVLLLKNEERRRV 746


>At3g19895.1 68416.m02519 expressed protein
          Length = 554

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 460 SKLTLRHSLLSLSPDLPVGRLSDPVVDSAKTALARVRVSKIIRFE 594
           +K  L H++  +SP        DP++  + T LARVR+S+I+ +E
Sbjct: 29  TKSPLSHAI-PVSPISAAYPSGDPILMMSGTPLARVRLSEILPYE 72


>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
           (KTN1) [Arabidopsis thaliana] GI:14133602
          Length = 523

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = -2

Query: 324 PQDRECSYRRPR*EGSRVVPLYRMAQRRRLAILMDS*VQVVMEVDVPDESRSSDGYPHGG 145
           P D + + RR R E    +PL     R+ L  +    V+V  +V++ D +R ++GY  G 
Sbjct: 393 PWDIDEALRR-RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGY-SGD 450

Query: 144 DGYNVVR 124
           D  NV R
Sbjct: 451 DLTNVCR 457


>At4g08370.1 68417.m01382 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 350

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +3

Query: 195 PP*QPGLKSPSV-SPVGVAAPFDKAVRHENPLIVA-AGNYIPDPADTM*SSRRRPKYVIS 368
           PP QP + SP + SP    +P      + +P       N  P P   + +S  RP YV  
Sbjct: 35  PPPQPYVYSPPLPSPYVYKSPPPSPYLYSSPPPPPYVYNSPPPPPPYIYNSPPRPPYVYK 94

Query: 369 DPPDP 383
            PP P
Sbjct: 95  SPPPP 99


>At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related contains
           weak similarity to Pre-mRNA cleavage complex II protein
           Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens]
          Length = 808

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 106 FTRNTQDGSRSPDVEFNFSLGRA 38
           FTR + DG+   +  FN+ +GRA
Sbjct: 265 FTRRSNDGANPSNQAFNYGMGRA 287


>At3g28450.1 68416.m03554 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAD02501
           from [Arabidopsis thaliana]
          Length = 605

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 429 DENDDRCLRYLKAPLVDRED 370
           DE+D RCLR LKA L D ++
Sbjct: 30  DEDDIRCLRGLKASLTDPQN 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,176,252
Number of Sequences: 28952
Number of extensions: 292269
Number of successful extensions: 873
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)