Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1213
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    29   0.51 
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    29   0.90 
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    28   1.2  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    28   1.6  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   3.6  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    26   6.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   6.3  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 316  RHRLKSPSVSAFADLIALNCLQSLFNSNSI 405
            +H LKS  V     L+ LNCL  LF+S+++
Sbjct: 1609 KHHLKSIVVKCTLQLLMLNCLWELFHSDNM 1638


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 115  DPVRAQSSEVI*NTPLFWE--RQLGILVDIDKKY 210
            +P +  + EV+ N PLFW+  ++L  L+D+  ++
Sbjct: 922  EPSKRPTIEVVLNHPLFWDYAKKLDFLIDVSDRF 955


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = +3

Query: 345 CLCRSNRAQLFAVIVQF*FNSCILHSCITFFIKLIICILNGTLYTYCTHGLLQSFVTLCI 524
           CL  ++R  +  V  +   N   L  C+T  +   I +++ T + Y    +L+S  TL  
Sbjct: 114 CLSPTSRLPVLYVFGRLPINLHKLEKCLTIPLDQNILLVSDTRWYYAQDSILKSLKTL-- 171

Query: 525 YECMMQTVYNHRLKHR 572
                Q VY   LK R
Sbjct: 172 ---GYQNVYESHLKER 184


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 325 LKSPSVSAFADLIALNCLQSLFNSNSIHVY 414
           +K+P   +FAD    NC   ++ S+SIH Y
Sbjct: 258 IKTPPRLSFADENRENCRTDIYRSDSIHEY 287


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 601 LL*AILLMLPNDVSLHIEFLYKFCTHYVQFEIL 699
           LL ++ L++PND  ++I+F YK     + F  +
Sbjct: 111 LLFSLFLLIPNDGRVNIKFFYKDFVDRIPFRFI 143


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = +2

Query: 380 SHCSILIQFMYTSFMYHIFY*-TNNLYFKWNFIYILHSRFVTEFCYTLYLRMYDAN 544
           SH  +  QF      YH  +  T   +F W F +         F   +++  YD+N
Sbjct: 48  SHTLVSSQFRRLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSN 103


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 294 YLKPQLLSSPAKKS*CQCLCRSNRAQLFAVI 386
           +L+   LSSP  KS CQ + R N  +  A +
Sbjct: 399 FLQGDWLSSPQYKSICQAILRMNSTKALACL 429


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 386  CSILIQFMYTSFMYHIFY*TNNLYFKWNF 472
            CS+ IQ +  +++Y I   T +LYF WNF
Sbjct: 2023 CSV-IQHI-AAYVYAISSSTGSLYFAWNF 2049


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,015
Number of Sequences: 5004
Number of extensions: 62730
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)