Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1208
         (725 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.3  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   5.8  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    22   5.8  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 539 CFKYFSYIFIVFLDGLLISI*YY 607
           C  YF Y FI+F   LL  +  Y
Sbjct: 112 CVYYFYYAFIIFTVHLLFLLCIY 134


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 528 IFT*IKLIYSINKYI*VPTTQKTQSTTIHKY*KNYSYFN 412
           I+T +K +Y+I K I + T +  +   + ++  +Y YF+
Sbjct: 21  IYTSMKPVYAICKLIGLNTLRIGRKGELKQHKSDYFYFS 59


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 528 IFT*IKLIYSINKYI*VPTTQKTQSTTIHKY*KNYSYFN 412
           I+T +K +Y+I K I + T +  +   + ++  +Y YF+
Sbjct: 21  IYTSMKPVYAICKLIGLNTLRIGRKGELKQHKSDYFYFS 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,184
Number of Sequences: 336
Number of extensions: 1853
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)