Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1208
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96048-1|CAB09419.1|  351|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z82051-8|CAB04814.1|  349|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z82051-5|CAB04813.1|  216|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U23139-3|AAK31486.2|  275|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z96048-1|CAB09419.1|  351|Caenorhabditis elegans Hypothetical
           protein F57A10.1 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 438 IYVWLYSVSFVSWALKYIYLYYRLVLFK*KCNTVVLSIFHIFLLFFWMDY 587
           IY  LYS +    A+++IY Y+ L       +T  +  FH +    W+ Y
Sbjct: 100 IYTGLYSATICQLAIQFIYRYWALF------DTPKIKYFHGWYYLIWVSY 143


>Z82051-8|CAB04814.1|  349|Caenorhabditis elegans Hypothetical
           protein T23D5.11 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 438 IYVWLYSVSFVSWALKYIYLYYRLVLFK*KCNTVVLSIFHIFLLFFWMDY 587
           IY  LYS +    A+++IY Y+ L       +T  +  FH +    W+ Y
Sbjct: 85  IYTGLYSATICQLAIQFIYRYWALF------DTPKIKYFHGWYYLIWVSY 128


>Z82051-5|CAB04813.1|  216|Caenorhabditis elegans Hypothetical
           protein T23D5.8 protein.
          Length = 216

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 438 IYVWLYSVSFVSWALKYIYLYYRLVLFK*KCNTVVLSIFHIFLLFFWMDY 587
           IY  LYS +    A+++IY Y+ L       +T  +  FH +    W+ Y
Sbjct: 85  IYTGLYSATICQLAIQFIYRYWALF------DTPKIKYFHGWYYLIWVSY 128


>U23139-3|AAK31486.2|  275|Caenorhabditis elegans Hypothetical
           protein F13H8.4 protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 438 IYVWLYSVSFVSWALKYIYLYYRLVL 515
           I  WL+ +S VSW   + Y + RL +
Sbjct: 86  IIAWLFIISIVSWLCIFYYFFDRLCM 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,187,500
Number of Sequences: 27780
Number of extensions: 144687
Number of successful extensions: 292
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)