Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1204X
(455 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000519A06 Cluster: PREDICTED: similar to poly(A)-sp... 91 1e-17
UniRef50_O95453 Cluster: Poly(A)-specific ribonuclease PARN; n=3... 88 7e-17
UniRef50_UPI00015A3D6C Cluster: Poly(A)-specific ribonuclease PA... 85 9e-16
UniRef50_A7S1J3 Cluster: Predicted protein; n=2; Nematostella ve... 80 3e-14
UniRef50_UPI00015B5402 Cluster: PREDICTED: similar to LOC524155 ... 79 6e-14
UniRef50_UPI0000D56E41 Cluster: PREDICTED: similar to poly(A)-sp... 72 5e-12
UniRef50_Q17L86 Cluster: Poly(A)-specific ribonuclease; n=2; Cul... 58 7e-08
UniRef50_Q08YN8 Cluster: Exodeoxyribonuclease VII, large subunit... 34 1.7
UniRef50_A2R1L5 Cluster: Remark: 'frezzled-like protein' seems t... 33 2.2
UniRef50_Q7RNK1 Cluster: Ribonucleoprotein homolog F21B7.26-Arab... 32 6.7
UniRef50_Q973X0 Cluster: Putative uncharacterized protein ST0778... 32 6.7
UniRef50_Q8FNE7 Cluster: Putative ABC transporter ATP-binding pr... 31 8.9
UniRef50_Q0W3Z1 Cluster: Putative uncharacterized protein; n=1; ... 31 8.9
>UniRef50_UPI0000519A06 Cluster: PREDICTED: similar to
poly(A)-specific ribonuclease (deadenylation nuclease);
n=1; Apis mellifera|Rep: PREDICTED: similar to
poly(A)-specific ribonuclease (deadenylation nuclease) -
Apis mellifera
Length = 576
Score = 90.6 bits (215), Expect = 1e-17
Identities = 39/74 (52%), Positives = 54/74 (72%)
Frame = +3
Query: 33 SPLIKPFLNKVFLSRTAHQDSPFINLAGPEPLXPRDHVFHLAFPREW*RNEITQLFSPFG 212
SPL+ PFLNK+ ++R +D P+INL G +P RDHVFHL FP+EW N+I+ LFSPFG
Sbjct: 395 SPLLNPFLNKLLIARL--KDVPYINLVGDDPNPSRDHVFHLTFPKEWKFNDISHLFSPFG 452
Query: 213 PITVQFIDDTSAFV 254
+ V ++ D SA++
Sbjct: 453 SVHVSWLSDISAYI 466
>UniRef50_O95453 Cluster: Poly(A)-specific ribonuclease PARN; n=36;
Euteleostomi|Rep: Poly(A)-specific ribonuclease PARN -
Homo sapiens (Human)
Length = 639
Score = 88.2 bits (209), Expect = 7e-17
Identities = 41/78 (52%), Positives = 54/78 (69%)
Frame = +3
Query: 21 LSITSPLIKPFLNKVFLSRTAHQDSPFINLAGPEPLXPRDHVFHLAFPREW*RNEITQLF 200
+S S LI+PF NK+FL R D P++NL GP+ RDHV H+ FP+EW +++ QLF
Sbjct: 408 VSARSKLIEPFFNKLFLMRV--MDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLF 465
Query: 201 SPFGPITVQFIDDTSAFV 254
S FG I + +IDDTSAFV
Sbjct: 466 SAFGNIQISWIDDTSAFV 483
>UniRef50_UPI00015A3D6C Cluster: Poly(A)-specific ribonuclease PARN
(EC 3.1.13.4) (Polyadenylate- specific ribonuclease)
(Deadenylating nuclease) (Deadenylation nuclease).; n=1;
Danio rerio|Rep: Poly(A)-specific ribonuclease PARN (EC
3.1.13.4) (Polyadenylate- specific ribonuclease)
(Deadenylating nuclease) (Deadenylation nuclease). -
Danio rerio
Length = 540
Score = 84.6 bits (200), Expect = 9e-16
Identities = 38/78 (48%), Positives = 55/78 (70%)
Frame = +3
Query: 21 LSITSPLIKPFLNKVFLSRTAHQDSPFINLAGPEPLXPRDHVFHLAFPREW*RNEITQLF 200
+S S L++PF NK+FL R D P++N++GP+ RDHV ++ FP+EW +++ QLF
Sbjct: 284 ISARSKLLEPFYNKLFLMRVI--DIPYLNMSGPDLQPKRDHVLYVTFPKEWKTSDLYQLF 341
Query: 201 SPFGPITVQFIDDTSAFV 254
S FG I V ++DDTSAFV
Sbjct: 342 SAFGNIQVSWVDDTSAFV 359
>UniRef50_A7S1J3 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 640
Score = 79.8 bits (188), Expect = 3e-14
Identities = 37/78 (47%), Positives = 52/78 (66%)
Frame = +3
Query: 21 LSITSPLIKPFLNKVFLSRTAHQDSPFINLAGPEPLXPRDHVFHLAFPREW*RNEITQLF 200
+S S L+ PF+NK+F+ R +D P++NLAGP+ RDHVF L FP W +I LF
Sbjct: 455 ISPDSALVTPFINKIFMMRM--EDIPYLNLAGPDLKPARDHVFFLTFPSSWKYVDILDLF 512
Query: 201 SPFGPITVQFIDDTSAFV 254
SPFG + V +++D SA+V
Sbjct: 513 SPFGFVYVSWLNDVSAYV 530
>UniRef50_UPI00015B5402 Cluster: PREDICTED: similar to LOC524155
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to LOC524155 protein - Nasonia vitripennis
Length = 608
Score = 78.6 bits (185), Expect = 6e-14
Identities = 33/73 (45%), Positives = 52/73 (71%)
Frame = +3
Query: 33 SPLIKPFLNKVFLSRTAHQDSPFINLAGPEPLXPRDHVFHLAFPREW*RNEITQLFSPFG 212
SPL+ P+LNK+ ++R +D P INL G +P R+HVFH+ FP++W +++T LFSP+G
Sbjct: 396 SPLLNPYLNKLLIARL--KDYPHINLIGNDPNPSREHVFHVTFPKQWKLSDLTSLFSPYG 453
Query: 213 PITVQFIDDTSAF 251
V ++ DT+A+
Sbjct: 454 GAYVAWLSDTTAY 466
>UniRef50_UPI0000D56E41 Cluster: PREDICTED: similar to
poly(A)-specific ribonuclease (deadenylation nuclease);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
poly(A)-specific ribonuclease (deadenylation nuclease) -
Tribolium castaneum
Length = 634
Score = 72.1 bits (169), Expect = 5e-12
Identities = 32/57 (56%), Positives = 43/57 (75%)
Frame = +3
Query: 39 LIKPFLNKVFLSRTAHQDSPFINLAGPEPLXPRDHVFHLAFPREW*RNEITQLFSPF 209
L+KP+LNK+FL +DS +INL G +P PRDHVF+L FP+EW ++ I +LFSPF
Sbjct: 406 LLKPYLNKLFLMML--RDSQYINLEGGDPNPPRDHVFYLTFPKEWKQSNIIELFSPF 460
>UniRef50_Q17L86 Cluster: Poly(A)-specific ribonuclease; n=2;
Culicidae|Rep: Poly(A)-specific ribonuclease - Aedes
aegypti (Yellowfever mosquito)
Length = 582
Score = 58.4 bits (135), Expect = 7e-08
Identities = 25/73 (34%), Positives = 45/73 (61%)
Frame = +3
Query: 36 PLIKPFLNKVFLSRTAHQDSPFINLAGPEPLXPRDHVFHLAFPREW*RNEITQLFSPFGP 215
P++K ++N++FL R + + +I G EP R+HVF ++FP W +++I F +G
Sbjct: 401 PILKAYINRIFLLRVSEIN--YIYTHGKEPSFSREHVFFVSFPETWRQSDIVNRFRNYGQ 458
Query: 216 ITVQFIDDTSAFV 254
+ V +++ SAFV
Sbjct: 459 VYVNWVNSNSAFV 471
>UniRef50_Q08YN8 Cluster: Exodeoxyribonuclease VII, large subunit;
n=2; Cystobacterineae|Rep: Exodeoxyribonuclease VII,
large subunit - Stigmatella aurantiaca DW4/3-1
Length = 575
Score = 33.9 bits (74), Expect = 1.7
Identities = 19/34 (55%), Positives = 20/34 (58%)
Frame = -1
Query: 119 RSRQVYERRVLMSRPGQEHLVQEGLDERRRDGQE 18
R RQ ERRVL R Q HL +D RRR GQE
Sbjct: 351 RLRQAAERRVLELRERQGHLAGRLVDPRRRLGQE 384
>UniRef50_A2R1L5 Cluster: Remark: 'frezzled-like protein' seems to
be the misspelled 'frizzled- like protein'; n=1;
Aspergillus niger|Rep: Remark: 'frezzled-like protein'
seems to be the misspelled 'frizzled- like protein' -
Aspergillus niger
Length = 131
Score = 33.5 bits (73), Expect = 2.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 125 WFRSRQVYERRVLMSRPGQEHLVQEGLDERRRDGQEP 15
W + ++ ER+ L RP + V E DE R+DGQ P
Sbjct: 70 WSKRSEISERKSLYGRPRGQCSVCERRDEARKDGQRP 106
>UniRef50_Q7RNK1 Cluster: Ribonucleoprotein homolog
F21B7.26-Arabidopsis thaliana-related; n=5;
Plasmodium|Rep: Ribonucleoprotein homolog
F21B7.26-Arabidopsis thaliana-related - Plasmodium
yoelii yoelii
Length = 507
Score = 31.9 bits (69), Expect = 6.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 123 PLXPRDHVFHLAFPREW*RNEITQLFSPFGPITVQFI 233
P+ +FH+ P EW +N++ FSPFG I +I
Sbjct: 395 PVGANIFIFHI--PNEWIQNDLLAAFSPFGNIISAYI 429
>UniRef50_Q973X0 Cluster: Putative uncharacterized protein ST0778;
n=1; Sulfolobus tokodaii|Rep: Putative uncharacterized
protein ST0778 - Sulfolobus tokodaii
Length = 701
Score = 31.9 bits (69), Expect = 6.7
Identities = 11/31 (35%), Positives = 23/31 (74%)
Frame = -2
Query: 424 IAYVLLQSLFSASAVFVVILLLGVSLIFLYL 332
++Y+ +SL+S V+++ LG+S++FLY+
Sbjct: 187 VSYLKRESLYSIITTLVIVVSLGISVLFLYV 217
>UniRef50_Q8FNE7 Cluster: Putative ABC transporter ATP-binding
protein; n=5; Corynebacterium|Rep: Putative ABC
transporter ATP-binding protein - Corynebacterium
efficiens
Length = 621
Score = 31.5 bits (68), Expect = 8.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 18 FLSITSPLIKPFLNKVFLSRTAHQDSPFINLAGPEPLXPRD 140
+ + S ++P NK + T D+P + L PEPL P +
Sbjct: 317 YFDVMSEPVEPTANKELVRTTETSDTPALTLTVPEPLPPAE 357
>UniRef50_Q0W3Z1 Cluster: Putative uncharacterized protein; n=1;
uncultured methanogenic archaeon RC-I|Rep: Putative
uncharacterized protein - Uncultured methanogenic
archaeon RC-I
Length = 206
Score = 31.5 bits (68), Expect = 8.9
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 327 YYKYKKINDTPSSKITTKTAEAENNDCN-KTYAILHYI 437
+Y+Y +N +P S+I T +NDC K +LHY+
Sbjct: 159 WYRYVLVNPSPDSEIRYITFRDTSNDCAVKVANVLHYV 196
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,190,123
Number of Sequences: 1657284
Number of extensions: 9320361
Number of successful extensions: 25025
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 24329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25015
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23931581955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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