Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1204X
         (455 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   1.8  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   3.1  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    21   4.1  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    21   4.1  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    21   4.1  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 427 SIAYVLLQSLFSASAVFVVILL 362
           +I Y  L SLF ++A+ V+ILL
Sbjct: 368 NIDYGTLYSLFGSTAMNVIILL 389


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = -1

Query: 410 IAVVVLSLRRFRRYLTAGRIIN------LLILVIRCEGYLGMFASALLT 282
           I V   SL      +T G++ N      LLILV+   G  G F + +L+
Sbjct: 335 ILVYYASLDETPNPVTNGKLYNFNTFAKLLILVVSLSGTFGFFGTHILS 383


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 161 KRQMKHVVSGXQW 123
           ++Q+ H+V G QW
Sbjct: 317 EQQVPHIVKGNQW 329


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 161 KRQMKHVVSGXQW 123
           ++Q+ H+V G QW
Sbjct: 318 EQQVPHIVKGNQW 330


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 161 KRQMKHVVSGXQW 123
           ++Q+ H+V G QW
Sbjct: 318 EQQVPHIVKGNQW 330


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,371
Number of Sequences: 336
Number of extensions: 2337
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)