Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1204X
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   2.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   2.4  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   2.4  
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    25   4.2  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   4.2  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   5.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   7.3  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   7.3  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   7.3  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 223 TVIGPNGLNSCVISFLYHSLGNAK*NTWSL 134
           T+I P+ L+SC +  ++H   N K   W++
Sbjct: 239 TLIWPSVLSSCALFKIFHDNDNTKACNWTI 268


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 141 HVFHLAFPREW*RNEITQ 194
           HVFHL+  R+W +N I Q
Sbjct: 218 HVFHLSCIRKWCKNSIEQ 235


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = -2

Query: 454  LKLPLMI*WSIAYVLLQSLFSAS---AVFVVILLLGVSLIFLY 335
            LKLP    W++ ++ L+ LFS S    +F   ++L +SL+F +
Sbjct: 1006 LKLP----WAVFHIFLRYLFSHSFLVIIFACSVILNLSLMFCF 1044


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 154 WRFPESGKGMKSRN 195
           W FP SGKG+K ++
Sbjct: 142 WNFPHSGKGIKDQD 155


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 360 SSKITTKTAEAENNDCNKTYAILHYIIS 443
           +SK+ T +  +EN D NKT   + YI S
Sbjct: 514 NSKVQTTSRASENADTNKTQHNIKYIDS 541


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 378 SSLSYCWAYH*SSYTCNTM*GLSWN-VRECFAN 283
           +SLS C A H  +++C+ M   +W+    CF +
Sbjct: 74  ASLSVCVALHWIAFSCSVMCHFAWSCALPCFVD 106


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 119 RSRQVYERRVLMSRPGQEHLVQEGLDERRRD 27
           R R+  E+R+L  R  +E L +E  + RRR+
Sbjct: 692 RLREEEEKRILEERKRREKLDKEEEERRRRE 722


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 71  VQDGSSGLAVHKPGGT 118
           +Q+GS GL + KP G+
Sbjct: 447 IQEGSEGLVIKKPSGS 462


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 68  PVQDGSSGLAVHKPGGTGTT 127
           P  DG +G++++ PGG  T+
Sbjct: 477 PTLDGDTGVSIYAPGGAITS 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,891
Number of Sequences: 5004
Number of extensions: 37405
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)