Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1204X
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0312 + 42677752-42678561,42678701-42678910,42679597-426797...    29   1.8  
06_01_0560 - 3977456-3977527,3978069-3978182,3978264-3978335,397...    27   5.4  
02_03_0317 - 17659356-17659634,17660028-17660552,17660587-176606...    27   5.4  
12_01_0088 - 698169-698614,699514-700819,703041-703148                 27   9.5  
11_01_0087 - 654461-654912,655878-657186,659080-659187                 27   9.5  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    27   9.5  
05_01_0438 + 3475017-3475484                                           27   9.5  

>01_07_0312 +
           42677752-42678561,42678701-42678910,42679597-42679704,
           42679915-42680010,42680090-42680182,42680276-42680386,
           42680482-42680514,42680592-42680642,42680960-42681037,
           42681145-42681165
          Length = 536

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 291 STREHSKITLTSYYKYKKINDTPSSKITTKTAEAENNDCNK 413
           S RE    T T+  K+ K N++ S++ TTK   A N  C K
Sbjct: 130 SNREAQAAT-TNRQKHTKSNNSLSTRATTKLRSATNTPCQK 169


>06_01_0560 -
           3977456-3977527,3978069-3978182,3978264-3978335,
           3978428-3978497,3978608-3978705,3978791-3978992,
           3979074-3979141,3979960-3980358
          Length = 364

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 128 QWFRSRQVYERRVLMSRPGQEHLVQEGLDERRRDGQ 21
           QW +   + E  +LM+ P  +HL+ + +    RDG+
Sbjct: 146 QWLQKADIQEEYILMAEP--DHLIVKPIPNLSRDGR 179


>02_03_0317 -
           17659356-17659634,17660028-17660552,17660587-17660661,
           17661699-17662496
          Length = 558

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -3

Query: 165 WETPNETRGLWXAVVPVPPGL----*TASPDEPSW 73
           W++ NE R LW  +  +PPGL     T  P E SW
Sbjct: 463 WQSQNENRTLW-KLGTLPPGLITFYSTTKPLEKSW 496


>12_01_0088 - 698169-698614,699514-700819,703041-703148
          Length = 619

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 185 NHATI*SVWSNNSTIHR*YVSVRALGDVNRRRLLAKHS 298
           N ATI  V      +HR Y  V  L D+    ++A H+
Sbjct: 64  NQATISDVLRTPDALHRMYAEVSLLADLRHDAIIAFHA 101


>11_01_0087 - 654461-654912,655878-657186,659080-659187
          Length = 622

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 185 NHATI*SVWSNNSTIHR*YVSVRALGDVNRRRLLAKHS 298
           N ATI  V      +HR Y  V  L D+    ++A H+
Sbjct: 64  NQATISDVLRTPDALHRMYAEVSLLADLRHDAIIAFHA 101


>09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,
            8511209-8511523,8511576-8511682,8512559-8512629,
            8512952-8513029,8513390-8513454,8514224-8514274,
            8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 15   RFLSITSPLIKPFLNKVFLSRTAHQDSPFINLAGPEPLXPRDHVFHLAFPREW 173
            R+L I    I   + K++  +T     PF  ++ P  +    ++ HL  PRE+
Sbjct: 1102 RYLGICQREIPEAICKMYKLQTLRNTYPFDTISLPRNVSALSNLRHLVLPREF 1154


>05_01_0438 + 3475017-3475484
          Length = 155

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 300 EHSKITLTSYYKYKKINDTPSSKITTKTAEAENNDCNK-TYAILHY 434
           +H K+ L     YK   D  + K+T    E  NNDC   T+   H+
Sbjct: 94  KHKKVKLAVLQFYKV--DDATGKVTRLRKECPNNDCGAGTFMANHF 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,712,857
Number of Sequences: 37544
Number of extensions: 261549
Number of successful extensions: 630
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)