Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1204X
         (455 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53113| Best HMM Match : RVT_1 (HMM E-Value=2.2)                     27   5.6  
SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)                    27   5.6  
SB_25745| Best HMM Match : Ank (HMM E-Value=0)                         27   7.4  
SB_36189| Best HMM Match : ANATO (HMM E-Value=2.9)                     27   9.7  

>SB_53113| Best HMM Match : RVT_1 (HMM E-Value=2.2)
          Length = 359

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
 Frame = -1

Query: 242 RIIDELYCYWTKRTK*LRDFIPLPLSGKRQMKHVV--SGXQWFRSRQV------YERRVL 87
           R ID+++  WT+    LR+F+    S  R +K     S  Q  R R++      +E+RVL
Sbjct: 262 RYIDDIFMIWTEGEDTLREFMAHMNSIHRTIKFTFEWSTNQALRIRRICSEDSSFEKRVL 321

Query: 86  MSRPGQEHLVQEGLDER 36
                Q +LV  G D R
Sbjct: 322 EL---QGYLVDRGYDSR 335


>SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
 Frame = -1

Query: 242 RIIDELYCYWTKRTK*LRDFIPLPLSGKRQMKHVV--SGXQWFRSRQV------YERRVL 87
           R ID+++  WT+    LR+F+    S  R +K     S  Q  R R++      +E+RVL
Sbjct: 414 RYIDDIFMIWTEGEDTLREFMAHMNSIHRTIKFTFEWSTNQALRIRRICSEDSSFEKRVL 473

Query: 86  MSRPGQEHLVQEGLDER 36
                Q +LV  G D R
Sbjct: 474 EL---QGYLVDRGYDSR 487


>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3922

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 363  SKITTKTAEAENNDCNKTYAILHYIISGNF 452
            +K++    + +NN    TYAI +  +SGNF
Sbjct: 2463 TKVSANDPDTKNNGAPFTYAIYNGTVSGNF 2492


>SB_25745| Best HMM Match : Ank (HMM E-Value=0)
          Length = 320

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 356 RIINLLILVIRCEGYLGMFASALLTDVACSRRL 258
           R+++LLI +   +GY  + A+AL    A  RRL
Sbjct: 130 RVVDLLINLQNSKGYTALIAAALFNRPAVVRRL 162


>SB_36189| Best HMM Match : ANATO (HMM E-Value=2.9)
          Length = 199

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -3

Query: 429 GVLHTFYCSRCSQPPPFSSLSYCWAYH*SSYTCNTM*GLSWNVRECFANR 280
           G ++  YC RC +  P   L +C  YH SS    +  G    V  C   R
Sbjct: 131 GSVNILYCYRCGEYFPCCELGHC-RYHTSSADFGSHKGTIVGVYPCCQQR 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,088
Number of Sequences: 59808
Number of extensions: 299473
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)