Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1204X
(455 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter... 29 1.6
U80028-9|AAN73867.1| 372|Caenorhabditis elegans Serpentine rece... 29 2.1
AF022967-1|AAY86215.1| 370|Caenorhabditis elegans Hypothetical ... 27 4.9
Z93385-10|CAB07643.1| 702|Caenorhabditis elegans Hypothetical p... 27 6.5
Z81114-7|CAB03290.1| 702|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF039042-4|AAC48247.2| 332|Caenorhabditis elegans Serpentine re... 27 8.6
AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical ... 27 8.6
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ... 27 8.6
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ... 27 8.6
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ... 27 8.6
>U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 5 protein.
Length = 284
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 56 EQGVPVQDGSSGLAVHKPGGTGTTASQRPRVS 151
+QG P QDG GLA PG G T +P V+
Sbjct: 183 DQGTPGQDGQPGLA-GPPGRDGLTGKGQPGVA 213
>U80028-9|AAN73867.1| 372|Caenorhabditis elegans Serpentine
receptor, class w protein117 protein.
Length = 372
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 196 YLVRLVQ*QYNSSMIRQRSCVRRREQATSVSKALANIP 309
++ L+ QY ++I SC + TS SKA+ N+P
Sbjct: 328 FICLLISSQYRKTIIHVLSCGFINSKKTSASKAVVNLP 365
>AF022967-1|AAY86215.1| 370|Caenorhabditis elegans Hypothetical
protein C13A2.12 protein.
Length = 370
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 297 REHSKITLTSYYKYKKINDTPSSKI 371
+++SK LTSY KY ++N T SK+
Sbjct: 4 KKNSKNILTSYAKYHELNATVISKV 28
>Z93385-10|CAB07643.1| 702|Caenorhabditis elegans Hypothetical
protein M01E5.6 protein.
Length = 702
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 330 YKYKKINDTPSSKITTKTAEAENNDCNK 413
Y Y++++DT S + K AE+++ D N+
Sbjct: 467 YGYQELDDTMSEGLLEKEAESKHQDANE 494
>Z81114-7|CAB03290.1| 702|Caenorhabditis elegans Hypothetical
protein M01E5.6 protein.
Length = 702
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 330 YKYKKINDTPSSKITTKTAEAENNDCNK 413
Y Y++++DT S + K AE+++ D N+
Sbjct: 467 YGYQELDDTMSEGLLEKEAESKHQDANE 494
>AF039042-4|AAC48247.2| 332|Caenorhabditis elegans Serpentine
receptor, class i protein27 protein.
Length = 332
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 305 MFASALLTDVACSRRLTHER*RIIDELYCYWTKRTK*LRDFIPLPLSGK 159
+F A+ + S HE+ RI++ELY + + LR+F P++ K
Sbjct: 148 LFPFAIAFSIYRSGDTLHEQMRILEELYPEYAGQFGNLREFQYYPMNNK 196
>AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical
protein F44E7.4d protein.
Length = 984
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 12 TRFLSITSPLIKPFLNKVFLSRTAHQDSPFINLAGPEPL 128
TR +SI+ P P LN FLS+ H S I GP L
Sbjct: 332 TRLVSISFPF--PDLNGEFLSQPGHYISHLIGHEGPGSL 368
>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
protein F44E7.4c protein.
Length = 1008
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 12 TRFLSITSPLIKPFLNKVFLSRTAHQDSPFINLAGPEPL 128
TR +SI+ P P LN FLS+ H S I GP L
Sbjct: 273 TRLVSISFPF--PDLNGEFLSQPGHYISHLIGHEGPGSL 309
>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
protein F44E7.4a protein.
Length = 1067
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 12 TRFLSITSPLIKPFLNKVFLSRTAHQDSPFINLAGPEPL 128
TR +SI+ P P LN FLS+ H S I GP L
Sbjct: 332 TRLVSISFPF--PDLNGEFLSQPGHYISHLIGHEGPGSL 368
>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
protein F44E7.4b protein.
Length = 1051
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 12 TRFLSITSPLIKPFLNKVFLSRTAHQDSPFINLAGPEPL 128
TR +SI+ P P LN FLS+ H S I GP L
Sbjct: 332 TRLVSISFPF--PDLNGEFLSQPGHYISHLIGHEGPGSL 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,570,812
Number of Sequences: 27780
Number of extensions: 216680
Number of successful extensions: 605
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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