Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1204X
         (455 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53900.2 68416.m05955 uracil phosphoribosyltransferase, putat...    30   0.85 
At3g53900.1 68416.m05954 uracil phosphoribosyltransferase, putat...    30   0.85 
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ...    28   3.4  
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot...    27   4.5  
At5g25757.1 68418.m03055 expressed protein                             27   6.0  
At5g25754.1 68418.m03054 expressed protein                             27   6.0  
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ...    27   7.9  
At3g04210.1 68416.m00445 disease resistance protein (TIR-NBS cla...    27   7.9  
At2g27080.2 68415.m03254 harpin-induced protein-related / HIN1-r...    27   7.9  
At2g27080.1 68415.m03253 harpin-induced protein-related / HIN1-r...    27   7.9  

>At3g53900.2 68416.m05955 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|P50926 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Lactococcus lactis}; contains Pfam profile PF00156:
           Phosphoribosyl transferase domain
          Length = 296

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 165 REW*RNEITQLFSPFGPITVQFID 236
           REW    + ++ SP GP +V+FID
Sbjct: 123 REWLPTVVGEIMSPMGPASVEFID 146


>At3g53900.1 68416.m05954 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|P50926 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Lactococcus lactis}; contains Pfam profile PF00156:
           Phosphoribosyl transferase domain
          Length = 231

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 165 REW*RNEITQLFSPFGPITVQFID 236
           REW    + ++ SP GP +V+FID
Sbjct: 58  REWLPTVVGEIMSPMGPASVEFID 81


>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif (aka RRM, RBD, or RNP domain)
          Length = 198

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 147 FHLAFPREW*RNEITQLFSPFGPITVQFIDDT 242
           + +  PRE   +E+ +LFSP G IT   I +T
Sbjct: 30  YDIELPREHVESELKKLFSPCGEITDVHIPET 61


>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 551

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 330 YKYKKINDTPSSKITTKTAE 389
           +KY  I D P++KITT T E
Sbjct: 396 FKYNVIKDEPAAKITTLTVE 415


>At5g25757.1 68418.m03055 expressed protein
          Length = 514

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 69  LSRTAHQDSPFINLAGPEPLXPRDHVFHLAFPREW*RNEITQLFSPFGPITVQFID 236
           +S    +D+P+ ++    P    DHVF L +   W R+    L++   P   Q ID
Sbjct: 57  ISERLFKDTPWPSVEAIAPYVDNDHVFCLLYREMWFRH----LYARLSPTLKQRID 108


>At5g25754.1 68418.m03054 expressed protein
          Length = 514

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 69  LSRTAHQDSPFINLAGPEPLXPRDHVFHLAFPREW*RNEITQLFSPFGPITVQFID 236
           +S    +D+P+ ++    P    DHVF L +   W R+    L++   P   Q ID
Sbjct: 57  ISERLFKDTPWPSVEAIAPYVDNDHVFCLLYREMWFRH----LYARLSPTLKQRID 108


>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 783

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 141 HVFHLAFPREW*RNEITQLFSPFGPI 218
           HV ++AF  E  + E+ QLFSPFG I
Sbjct: 672 HVKNIAF--EATKRELRQLFSPFGQI 695


>At3g04210.1 68416.m00445 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 531

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 410 IAVVVLSLRRFRRYLTAGRIINLLILVIRCEGYLGMFASALLTDV 276
           +A+V LS    R+Y ++   +N L L+++C   LG+    L  D+
Sbjct: 121 VAIVFLS----RKYASSSWCLNELALIMKCRKELGLTVMTLFYDL 161


>At2g27080.2 68415.m03254 harpin-induced protein-related /
           HIN1-related / harpin-responsive protein-related
           contains 1 transmembrane domain; similar to hin1 homolog
           (GI:13122296) [Arabidopsis thaliana]; similar to hin1
           (GI:22830759) [Nicotiana tabacum]
          Length = 260

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 388 SAVFVVILLLGVSLIFLYL*Y 326
           +AVF++I+L G+S   LYL Y
Sbjct: 80  AAVFILIVLAGISFAVLYLIY 100


>At2g27080.1 68415.m03253 harpin-induced protein-related /
           HIN1-related / harpin-responsive protein-related
           contains 1 transmembrane domain; similar to hin1 homolog
           (GI:13122296) [Arabidopsis thaliana]; similar to hin1
           (GI:22830759) [Nicotiana tabacum]
          Length = 260

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 388 SAVFVVILLLGVSLIFLYL*Y 326
           +AVF++I+L G+S   LYL Y
Sbjct: 80  AAVFILIVLAGISFAVLYLIY 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,006,339
Number of Sequences: 28952
Number of extensions: 202583
Number of successful extensions: 489
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)