Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1201
         (720 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q77VH5 Cluster: Fiber protein; n=2; Aviadenovirus|Rep: ...    33   7.1  
UniRef50_Q241U9 Cluster: Hypothetical repeat containing protein;...    33   9.4  

>UniRef50_Q77VH5 Cluster: Fiber protein; n=2; Aviadenovirus|Rep:
           Fiber protein - Fowl adenovirus 9
          Length = 571

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = -2

Query: 641 KNPSFILQSYVTSNRSCL*NGGHVYYSNSSFLSFKMASSLKCDFSQSVYTTRISAYFTEC 462
           +NPS +  +Y+ S  + L N       NSS   F  A  L+  +S  + T+ +       
Sbjct: 355 RNPSTLPDAYLESGTNYL-NNFTAQAENSSVFKFNCAYFLQSWYSNGLVTSSLYLKIDRA 413

Query: 461 SFRRMPSRRSRVGSRHY 411
            F  MP+ +S   +R++
Sbjct: 414 QFSNMPTGQSAENARYF 430


>UniRef50_Q241U9 Cluster: Hypothetical repeat containing protein;
           n=2; Tetrahymena thermophila SB210|Rep: Hypothetical
           repeat containing protein - Tetrahymena thermophila
           SB210
          Length = 1085

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = -2

Query: 626 ILQSYVTSNRSCL*NGGHVYYSNSSFLSFKMAS-SL-KCDFSQSVY 495
           I QSY +SN +    GG +Y+ +SS ++F+ ++ SL + D   SVY
Sbjct: 614 ITQSYFSSNHALKSQGGAIYFESSSLIAFQNSNFSLNQADIGGSVY 659


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,719,675
Number of Sequences: 1657284
Number of extensions: 11126391
Number of successful extensions: 20876
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20873
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)