Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1201
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    29   0.67 
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   1.2  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    27   3.6  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   8.2  

>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 566 YSNSSFLSFKMASSLKCDFSQSVYTTRISAYFTECSFRRMPS 441
           YS    L    ASSL     Q+ Y + IS Y     FR++PS
Sbjct: 255 YSGHHLLGQGQASSLNLAEQQAAYNSLISYYIHSPPFRQLPS 296


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -2

Query: 623 LQSYVTSNRSCL*NGGHVYYSNSSFLSFKMASSLKCDFSQSVYTTRISA 477
           LQSY+ S  +    G     S SS  SF+M   +   F  +++ TRI A
Sbjct: 120 LQSYLISETALPELGSFQELSTSSLGSFRMFQQIAVGFVDALFCTRIPA 168


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 154 WKKNKFGYHMLFLVKNKRYRNCINARDSYIDAS 252
           WK +K+ Y   +  +++ Y    N  D YI  S
Sbjct: 67  WKHDKYSYEKRYQERDREYARSKNIPDQYIGRS 99


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 106 NRKRISKVKNLIYFFGWKKNKFGY 177
           N + I+ ++N++  F WK  + GY
Sbjct: 281 NEEGINALRNVLVAFSWKNQEVGY 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,847
Number of Sequences: 5004
Number of extensions: 53307
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)