Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1201
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022978-9|AAG24185.1|  353|Caenorhabditis elegans Seven tm rece...    30   1.9  
Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF022978-9|AAG24185.1|  353|Caenorhabditis elegans Seven tm
           receptor protein 256 protein.
          Length = 353

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/48 (35%), Positives = 30/48 (62%)
 Frame = -1

Query: 708 VDIGDIAYKFFFFNILYKLLNSQKSLIYFTIVRDFKQILFVKWRPCLL 565
           +D+ ++AY F +F    KLL  + +  +F IV ++K+ LF K+  C+L
Sbjct: 45  IDLFELAYAFLYFLEKPKLLTKESA--FFLIV-NWKESLFPKFVVCVL 89


>Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical
           protein F53B6.2b protein.
          Length = 711

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 560 NSSFLSFKMASSLKCDFSQSVYTTRISAYFTECSFRRMPSRRSRVGSRHYC 408
           ++S L  K  ++LKC       +T  S  +++C  RR P  +SR  ++H C
Sbjct: 129 SASCLGGKQKAALKC----IQVSTGKSVQWSQCDARRRPPEKSRPCNQHPC 175


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
           protein F53B6.2a protein.
          Length = 1045

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 560 NSSFLSFKMASSLKCDFSQSVYTTRISAYFTECSFRRMPSRRSRVGSRHYC 408
           ++S L  K  ++LKC       +T  S  +++C  RR P  +SR  ++H C
Sbjct: 463 SASCLGGKQKAALKC----IQVSTGKSVQWSQCDARRRPPEKSRPCNQHPC 509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,864,432
Number of Sequences: 27780
Number of extensions: 290343
Number of successful extensions: 531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)