Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1201
(720 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 24 1.3
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 24 1.7
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 24 1.7
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 24 1.7
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 24 1.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.9
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 22 5.1
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 8.9
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 24.2 bits (50), Expect = 1.3
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -1
Query: 675 FFNILYKLLNSQKSLIYFTIVR-DFKQIL 592
F+N++YKL+++ K IY + D ++IL
Sbjct: 558 FYNVVYKLIDNIKKEIYDILPEVDVEEIL 586
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 330 LTAL*IWFSVCTCF 371
LTA+ +W VC CF
Sbjct: 360 LTAMNVWDGVCMCF 373
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 330 LTAL*IWFSVCTCF 371
LTA+ +W VC CF
Sbjct: 329 LTAMNVWDGVCMCF 342
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 330 LTAL*IWFSVCTCF 371
LTA+ +W VC CF
Sbjct: 380 LTAMNVWDGVCMCF 393
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 330 LTAL*IWFSVCTCF 371
LTA+ +W VC CF
Sbjct: 329 LTAMNVWDGVCMCF 342
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1
Query: 600 QILFVKWRPCLL 565
++LF++W PCLL
Sbjct: 296 KMLFLQWLPCLL 307
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1
Query: 600 QILFVKWRPCLL 565
++LF++W PCLL
Sbjct: 296 KMLFLQWLPCLL 307
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1
Query: 600 QILFVKWRPCLL 565
++LF++W PCLL
Sbjct: 296 KMLFLQWLPCLL 307
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1
Query: 600 QILFVKWRPCLL 565
++LF++W PCLL
Sbjct: 296 KMLFLQWLPCLL 307
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1
Query: 600 QILFVKWRPCLL 565
++LF++W PCLL
Sbjct: 296 KMLFLQWLPCLL 307
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1
Query: 600 QILFVKWRPCLL 565
++LF++W PCLL
Sbjct: 296 KMLFLQWLPCLL 307
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1
Query: 600 QILFVKWRPCLL 565
++LF++W PCLL
Sbjct: 364 KMLFLQWLPCLL 375
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1
Query: 600 QILFVKWRPCLL 565
++LF++W PCLL
Sbjct: 364 KMLFLQWLPCLL 375
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 22.2 bits (45), Expect = 5.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 280 HQ*SFGPNLTTAELHN 327
H+ FG L TAE+HN
Sbjct: 1114 HEDIFGITLRTAEVHN 1129
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.4 bits (43), Expect = 8.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 633 LIYFTIVRDFKQILFVKWRPCLLFEFVISFI 541
L+YF + R L + PC+L V+S++
Sbjct: 204 LVYFHLQRHMGNFLIQVYGPCVLL-VVLSWV 233
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,197
Number of Sequences: 438
Number of extensions: 3626
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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