Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1201
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08000.1 68418.m00931 glycosyl hydrolase family protein 17 si...    29   3.1  
At3g18300.1 68416.m02329 expressed protein ; expression supporte...    29   4.1  
At1g48780.1 68414.m05459 hypothetical protein                          29   4.1  

>At5g08000.1 68418.m00931 glycosyl hydrolase family protein 17
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]; C-terminal homology only
          Length = 194

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 575 HVYYSNSSFLSFKMASSLKCDFSQSVYTTRISAYFTECSFRRMPSRRSRVGS 420
           H  Y+ +SF   K  +S  C+F+ +   T     +T C+F    S  S  GS
Sbjct: 65  HCNYAVNSFFQKKGQASESCNFTGTATLTTTDPSYTGCAFPSSASGSSGSGS 116


>At3g18300.1 68416.m02329 expressed protein ; expression supported
           by MPSS
          Length = 274

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 563 SNSSFLSFKMASSLKCDFSQSV 498
           S+ SF SFK +SSL CD  +S+
Sbjct: 148 SSKSFWSFKRSSSLNCDIKKSL 169


>At1g48780.1 68414.m05459 hypothetical protein
          Length = 251

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 563 SNSSFLSFKMASSLKCDFSQSV 498
           S+ SF SFK +SSL CD  +S+
Sbjct: 134 SSKSFWSFKRSSSLNCDIKKSL 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,537,357
Number of Sequences: 28952
Number of extensions: 251616
Number of successful extensions: 502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)