Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1200
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    28   1.4  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   4.2  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   5.6  
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    25   7.4  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    25   7.4  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   9.7  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    25   9.7  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    25   9.7  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   9.7  

>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 172 NIPNKERKHGSCLN*WNS 225
           NIP+ E K GSC+N W S
Sbjct: 413 NIPDYETKPGSCINEWAS 430


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 649 GAELLKILEACHRFP 605
           G EL  +L  CHRFP
Sbjct: 283 GGELFSLLRKCHRFP 297


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +2

Query: 347 AVQIVSGALQNSDFKTLEGLVDK-DAINALKTAVSQLS 457
           +V++ +G  +NS F+T+E L++  D  N+  T +SQL+
Sbjct: 664 SVKVKNGDYENSSFETIENLIESFDYENS--TPLSQLT 699


>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 353 QIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLSVSQRQLLAI 484
           QIV   L  ++ K L   +DK   NAL   V+Q+      L A+
Sbjct: 316 QIVGDDLTVTNVKRLRTAIDKKCANALLLKVNQIGSVTESLNAV 359


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +2

Query: 119 WTKTNSNNLKMSYYTISKIFRTRNGNTEVASIDGIPADNVAFIHKNVKNWMF 274
           W + N   LK S+Y     F     N+   + D    D   FIH   KN +F
Sbjct: 72  WLRKNCPYLKESFYEFMHEFEFDPENSISLNYDSETKDLSIFIHGLWKNTIF 123


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 452 VETQQSSVH**HLYPPNPL 396
           +ET +SS+H  H YP N L
Sbjct: 411 LETDESSIHSRHWYPSNSL 429


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 535 DDSDKRWVEITMCYHVLRGLKNMKESGDMP-PIS 633
           D  D  W+ + +C +  + L  +KE  D+P PI+
Sbjct: 102 DSQDSSWINVRVCVNCRQQLSELKEL-DLPYPIT 134


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = +1

Query: 520 VGVIFDDSDKRWVEITMCYHVLRGLKNMKESG------DMPPISLGAQPQ 651
           +  I DD  K W+E     +V +  K +K SG       + PIS   +PQ
Sbjct: 47  LNTIDDDDKKSWIEWIYKNYVTKESKGIKYSGFQAYRTGIQPISFEQEPQ 96


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 131 NSNNLKMSYYTISKIFRTRNGNTEVASI-DGIPADNVAFIHKNVKNWMFSNFIIRPYFDQ 307
           N  N K     +SK     +G+  +  + D I  +    +++ ++NW++   ++ PY  Q
Sbjct: 338 NQENKKRLIQVVSKY--NVHGDPLIQELSDKILTEITGPLYEMIENWIYKGELVDPY--Q 393

Query: 308 EFSLNEFIEASKH 346
           EF + E   +  H
Sbjct: 394 EFFVKEKNGSESH 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,057
Number of Sequences: 5004
Number of extensions: 57769
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)