Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1200
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0133 + 22614219-22614651,22614767-22615671,22615918-226162...    29   3.3  
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364...    28   5.8  
02_03_0314 - 17600970-17600974,17601230-17601357,17601832-176019...    28   7.6  

>05_05_0133 +
           22614219-22614651,22614767-22615671,22615918-22616224,
           22616307-22616380
          Length = 572

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 661 YPGTGAELLKILEACHRFPSYFSALLTHD 575
           +PG G ELL ++ AC +  S+F +   H+
Sbjct: 317 FPGQGGELLDLVIACSQLTSFFQSKGCHE 345


>11_06_0460 +
           23836034-23836083,23836175-23836318,23836397-23836480,
           23836695-23836838,23836928-23836978,23837070-23837150,
           23837366-23837509,23837599-23837649,23837738-23838056,
           23839994-23840062,23840378-23840698,23841218-23841583,
           23842241-23842304,23842569-23842690
          Length = 669

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = -3

Query: 448 RHSSLQCINSIFIHQTL*SFEITVL*CS*NNLNCMFGSFNELVQTKFLIKIRSYNKI*KH 269
           R+ + + IN  FI   +   EIT L C   N++C     +E +Q K  I     N++ KH
Sbjct: 581 RNETAREINE-FIMNMIEGEEITYLSCDTYNIDCATTYSSERLQFKITIYNNGLNRL-KH 638

Query: 268 PILYVFMNE 242
           P      NE
Sbjct: 639 PKYMYTANE 647


>02_03_0314 -
           17600970-17600974,17601230-17601357,17601832-17601924,
           17602145-17602257,17602520-17602627,17602724-17602828,
           17603185-17603355,17603474-17603652,17603741-17603969,
           17604841-17604955,17605137-17605312,17606060-17606143,
           17606463-17606630,17607011-17607097,17607201-17607323
          Length = 627

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +2

Query: 176 FRTRNGNTEVASIDGIPA---DNVAFIHKNVKNWMFSN-FIIRPYFDQEFSLNEFIEA 337
           +R  + + E+ ++ G+     +NV F+H++  NW   +   ++  FD  FS   + +A
Sbjct: 160 YRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDIFSATRYTKA 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,265,668
Number of Sequences: 37544
Number of extensions: 314937
Number of successful extensions: 631
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)