Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1200
(663 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25407| Best HMM Match : BLYB (HMM E-Value=1.2) 36 0.022
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1) 30 1.9
SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 30 1.9
SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_27393| Best HMM Match : zf-C3HC4 (HMM E-Value=4.8e-18) 29 3.4
SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27) 29 4.5
SB_16379| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 29 4.5
SB_11034| Best HMM Match : Securin (HMM E-Value=6.8) 28 5.9
SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39) 28 7.8
SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_25407| Best HMM Match : BLYB (HMM E-Value=1.2)
Length = 237
Score = 36.3 bits (80), Expect = 0.022
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +2
Query: 284 IIRPYFDQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLSVS 463
+++ YFD+EF EF+ +K A+ + S L + ++ + + + +K AV
Sbjct: 96 LLKTYFDREFEEEEFLRGAKKALTVTSEMLAEKRYADMQKISTSNFVELIKKAVETHDPG 155
Query: 464 QRQLLAIEKEDIFYAFLIKLE 526
A+++ DI A L +E
Sbjct: 156 P----AVKESDIVTAELTNIE 172
>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
Length = 284
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 135 AITSKCPIIQYRKYSEQGTETRKLPQLMEFP 227
A T + P +R Y G ETR++PQ + P
Sbjct: 194 AYTGRIPYADHRGYRYHGPETRRMPQALHRP 224
>SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 960
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +2
Query: 248 HKNVKNWMFSNFIIRPYFDQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAIN 427
HK VK +FS+ + + + L+ + +HA + V+ AL+ KTL LVDK+ I
Sbjct: 322 HKLVKQ-VFSDGVGKLDGEYTIRLDTNAQPVQHAPRRVAVALRPQLKKTLNDLVDKEIIA 380
Query: 428 ALKTAVSQLS 457
+ T S +S
Sbjct: 381 PVTTPTSWIS 390
>SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 410 DKDAINALKTAVSQLSVSQRQLLAIEKEDIFYAFLIKL 523
DK + A+K ++ ++Q+Q +AI +D +A +KL
Sbjct: 271 DKGFVTAVKNQEKKIEMAQKQFIAIAADDFSFARKVKL 308
>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +2
Query: 374 QNSDFKTLEGLVDKDAINAL---KTAVSQLSVSQRQLLAIEKEDIFYAFLIKLE*FLMIR 544
QN+DF L G + DA+ L K + L R LL +EK + +++ +++
Sbjct: 150 QNTDFLYLTGFQEPDAVLLLGNNKATCTSLVSKNRMLLLLEKCGKVPVLVFRVQSTYLVQ 209
Query: 545 ISVGLKSQCV 574
G K C+
Sbjct: 210 TRYGGKGYCI 219
>SB_27393| Best HMM Match : zf-C3HC4 (HMM E-Value=4.8e-18)
Length = 391
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = +2
Query: 119 WTKTNSNNLKMSYYTIS--KIFRTRNGNTEVASIDGIPADNVAFIHKNVKNWMFSN--FI 286
W++ +S ++ T K NG +I G+ D+ + + + W N I
Sbjct: 270 WSRVSSTPTAVAERTTDEVKFAYMLNGLFIALAIGGLYFDSYRHVRRYFQRWSVLNRHMI 329
Query: 287 IRPYFDQEFSLNEFIEASKHAVQI 358
I PY DQ+ + + K AV I
Sbjct: 330 IEPYCDQDSLTERTVSSLKTAVSI 353
>SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27)
Length = 1036
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 341 KHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLSVSQRQLLAIEKED 496
+HA + V+ AL+ KTL LVDK+ I + T S +S ++A+ K+D
Sbjct: 451 QHAPRRVAVALRPQLKKTLNDLVDKEIIAPVTTPTSWIS----SMVAVPKKD 498
>SB_16379| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 499
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 341 KHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLSVSQRQLLAIEKED 496
+HA + V+ AL+ KTL LVDK+ I + T S +S ++A+ K+D
Sbjct: 344 QHAPRRVAVALRPQLKKTLNDLVDKEIIAPVTTPTSWIS----SMVAVPKKD 391
>SB_11034| Best HMM Match : Securin (HMM E-Value=6.8)
Length = 249
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 341 KHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLS 457
+HA + V+ AL+ KTL LVDK+ I + T S +S
Sbjct: 69 QHAPRRVAAALRPQLKKTLNDLVDKEIIAPVTTPTSWIS 107
>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
Length = 1486
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 398 EGLVDKDAINALKTAVSQLSVSQRQLL 478
EGL ++DA+ A K+ VSQ V +R+ L
Sbjct: 1431 EGLGERDALMARKSEVSQNGVDERECL 1457
>SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 341 KHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLS 457
+HA + V+ AL+ KTL LVDK+ I + T S +S
Sbjct: 187 QHAPRRVAVALRTQLKKTLNDLVDKEIIAPVTTPTSWIS 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,560,345
Number of Sequences: 59808
Number of extensions: 388480
Number of successful extensions: 928
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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