Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1200
         (663 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC017959-1|AAH17959.1|  291|Homo sapiens chromosome 2 open readi...    57   5e-08
AK026208-1|BAB15393.1|  291|Homo sapiens protein ( Homo sapiens ...    57   5e-08
AC097717-3|AAY24163.1|  291|Homo sapiens unknown protein.              57   5e-08

>BC017959-1|AAH17959.1|  291|Homo sapiens chromosome 2 open reading
           frame 47 protein.
          Length = 291

 Score = 57.2 bits (132), Expect = 5e-08
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
 Frame = +2

Query: 254 NVKNWMFSN---FIIRPYFDQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAI 424
           N  NW+ +    F+I  YFD+EFS+ EF E +K A   VS  L    F  LE LV K+ +
Sbjct: 117 NPINWVRTRIKAFLIWAYFDKEFSITEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVL 176

Query: 425 NALKTAVSQLSVSQRQLLAIEKEDIFY 505
           +ALK  V+ L  + +  LA   ++I +
Sbjct: 177 HALKEKVTSLPDNHKNALAANIDEIVF 203


>AK026208-1|BAB15393.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22555 fis, clone HSI01193. ).
          Length = 291

 Score = 57.2 bits (132), Expect = 5e-08
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
 Frame = +2

Query: 254 NVKNWMFSN---FIIRPYFDQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAI 424
           N  NW+ +    F+I  YFD+EFS+ EF E +K A   VS  L    F  LE LV K+ +
Sbjct: 117 NPINWVRTRIKAFLIWAYFDKEFSITEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVL 176

Query: 425 NALKTAVSQLSVSQRQLLAIEKEDIFY 505
           +ALK  V+ L  + +  LA   ++I +
Sbjct: 177 HALKEKVTSLPDNHKNALAANIDEIVF 203


>AC097717-3|AAY24163.1|  291|Homo sapiens unknown protein.
          Length = 291

 Score = 57.2 bits (132), Expect = 5e-08
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
 Frame = +2

Query: 254 NVKNWMFSN---FIIRPYFDQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAI 424
           N  NW+ +    F+I  YFD+EFS+ EF E +K A   VS  L    F  LE LV K+ +
Sbjct: 117 NPINWVRTRIKAFLIWAYFDKEFSITEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVL 176

Query: 425 NALKTAVSQLSVSQRQLLAIEKEDIFY 505
           +ALK  V+ L  + +  LA   ++I +
Sbjct: 177 HALKEKVTSLPDNHKNALAANIDEIVF 203


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,715,504
Number of Sequences: 237096
Number of extensions: 1797189
Number of successful extensions: 3561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3558
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)