Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1200
         (663 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070543-1|AAL48014.1|  263|Drosophila melanogaster LD24657p pro...    86   5e-17
AE013599-4001|AAF47306.1|  263|Drosophila melanogaster CG3776-PA...    86   5e-17

>AY070543-1|AAL48014.1|  263|Drosophila melanogaster LD24657p
           protein.
          Length = 263

 Score = 85.8 bits (203), Expect = 5e-17
 Identities = 38/86 (44%), Positives = 58/86 (67%)
 Frame = +2

Query: 254 NVKNWMFSNFIIRPYFDQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAINAL 433
           ++KNW+   FIIRPYFD EF L +FI  +K A+Q+VS  L   D  +L+ LV  +AI  L
Sbjct: 85  SLKNWITIQFIIRPYFDSEFQLKDFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAEL 144

Query: 434 KTAVSQLSVSQRQLLAIEKEDIFYAF 511
           +  + +LS++QR+ L I++ DI+ +F
Sbjct: 145 RPVIQKLSMTQRRQLEIKESDIYLSF 170



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
 Frame = +1

Query: 502 LCIPYQVGVIFDDSD----KRWVEITMCYHVLRGLKNMKESGDMPPISLGAQPQYQD 660
           L  PYQVG++FDD++    KR+VEITM +HV+RGL  M+E G+  P ++G  P+YQD
Sbjct: 168 LSFPYQVGIMFDDANDKLQKRFVEITMVFHVMRGLSEMRERGEEIPWNMGTLPEYQD 224



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 153 PIIQYRKYSEQGTETRKLPQLMEFPPIMWPSFIKT 257
           P  Q +K         +LP+LM+FP I+WPS + +
Sbjct: 51  PQEQDKKEQNARESLNRLPRLMDFPEIVWPSALNS 85


>AE013599-4001|AAF47306.1|  263|Drosophila melanogaster CG3776-PA
           protein.
          Length = 263

 Score = 85.8 bits (203), Expect = 5e-17
 Identities = 38/86 (44%), Positives = 58/86 (67%)
 Frame = +2

Query: 254 NVKNWMFSNFIIRPYFDQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAINAL 433
           ++KNW+   FIIRPYFD EF L +FI  +K A+Q+VS  L   D  +L+ LV  +AI  L
Sbjct: 85  SLKNWITIQFIIRPYFDSEFQLKDFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAEL 144

Query: 434 KTAVSQLSVSQRQLLAIEKEDIFYAF 511
           +  + +LS++QR+ L I++ DI+ +F
Sbjct: 145 RPVIQKLSMTQRRQLEIKESDIYLSF 170



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
 Frame = +1

Query: 502 LCIPYQVGVIFDDSD----KRWVEITMCYHVLRGLKNMKESGDMPPISLGAQPQYQD 660
           L  PYQVG++FDD++    KR+VEITM +HV+RGL  M+E G+  P ++G  P+YQD
Sbjct: 168 LSFPYQVGIMFDDANDKLQKRFVEITMVFHVMRGLSEMRERGEEIPWNMGTLPEYQD 224



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 153 PIIQYRKYSEQGTETRKLPQLMEFPPIMWPSFIKT 257
           P  Q +K         +LP+LM+FP I+WPS + +
Sbjct: 51  PQEQDKKEQNARESLNRLPRLMDFPEIVWPSALNS 85


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,241,465
Number of Sequences: 53049
Number of extensions: 578122
Number of successful extensions: 1330
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2848092300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)