Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1200
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-19|CAJ76951.1|  220|Caenorhabditis elegans Hypothetical...    34   0.10 
AF106575-8|AAC78169.1|  395|Caenorhabditis elegans Hypothetical ...    32   0.42 
AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg (sp...    29   3.9  
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U67957-1|AAB07587.2|  324|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AL132865-19|CAJ76951.1|  220|Caenorhabditis elegans Hypothetical
           protein Y62E10A.20 protein.
          Length = 220

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 16/72 (22%), Positives = 33/72 (45%)
 Frame = +2

Query: 299 FDQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLSVSQRQLL 478
           +++ F++   +  +   +  +S  L +  +  +E L  KDA+  ++ A   LS      L
Sbjct: 69  YEKSFTVESLVHGANKGIHSLSHFLADEKWDQMENLAVKDAVENMREARKGLSKQLENAL 128

Query: 479 AIEKEDIFYAFL 514
               +DI  +FL
Sbjct: 129 RFSPDDILLSFL 140


>AF106575-8|AAC78169.1|  395|Caenorhabditis elegans Hypothetical
           protein K04F1.10 protein.
          Length = 395

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +2

Query: 128 TNSNNLKMSYYTISKIFRTRNGNTEVASIDGIPADNVAFI--HKNVKNWMFSNFIIRPYF 301
           T  NNL++S +++ K+   R+ +T      G     ++F   H+++K W+ +N I  PY 
Sbjct: 282 TVRNNLQLSNFSLPKLKGVRSSDTLQ---QGYVQRWISFYDNHESLKKWLVNNSICNPYM 338

Query: 302 D 304
           D
Sbjct: 339 D 339


>AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg
           (spastic paraplegia)protein 7 protein.
          Length = 782

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 42  RNMNLVLRHVLTRQSLRLCDKIAYNNGQKQIAITSKCPIIQYRKYSEQGTETRKLPQLME 221
           R++ L  R  + R +LRL +K   N  +  I +  K P ++   Y E  + T  L + +E
Sbjct: 698 RDLLLEKRSDIERVALRLLEKEILNR-EDMIELVGKRPFVEKNTYEEMVSGTGGLDENVE 756

Query: 222 FP 227
            P
Sbjct: 757 LP 758


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 400 GFGG*RCY*CTEDCCVSTFCVPAAIVSHRKRRYILCIPYQVG 525
           GF G RC+   E+ C S+ CV    +     R  LC P   G
Sbjct: 56  GFSGKRCH-IKENLCASSPCVHGLCIDKLYSRQCLCQPGWTG 96


>U67957-1|AAB07587.2|  324|Caenorhabditis elegans Hypothetical
           protein K02H8.1 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 520 VGVIFDDSDKRWVEITMCYHVLRG 591
           V  +F+  D RW+++ +C   LRG
Sbjct: 27  VSQVFNVKDSRWLQVEVCREFLRG 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,071,325
Number of Sequences: 27780
Number of extensions: 320163
Number of successful extensions: 752
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)