Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1200
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.49 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.49 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   7.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 105 IAYNNGQKQIAITSKCPIIQYRKYSEQGTE 194
           +A +     + +   CP  +YR Y++ G+E
Sbjct: 249 VAQDESTSLVCVAQACPTPEYRWYAQTGSE 278


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 105 IAYNNGQKQIAITSKCPIIQYRKYSEQGTE 194
           +A +     + +   CP  +YR Y++ G+E
Sbjct: 249 VAQDESTSLVCVAQACPTPEYRWYAQTGSE 278


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 215 DGIPADNVAFIHKNV 259
           + +P DNV F  KNV
Sbjct: 244 EAVPGDNVGFNVKNV 258


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 215 DGIPADNVAFIHKNV 259
           + +P DNV F  KNV
Sbjct: 301 EAVPGDNVGFNVKNV 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,019
Number of Sequences: 438
Number of extensions: 4112
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)