Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1200
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51900.1 68414.m05850 hypothetical protein                          31   0.52 
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    31   0.90 
At5g15680.1 68418.m01834 expressed protein                             30   1.6  
At2g18810.1 68415.m02189 hypothetical protein contains Pfam prof...    30   1.6  
At2g36070.1 68415.m04429 mitochondrial import inner membrane tra...    29   3.6  

>At1g51900.1 68414.m05850 hypothetical protein
          Length = 774

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 470 QLLAIEKEDIFYAFLIKLE*FLMIRISVGLKSQCVIM 580
           QLL +E     Y FL+K   F+++R S   K  C+++
Sbjct: 63  QLLLVENAITIYGFLLKFTDFILLRFSPSKKHSCLLV 99


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
 Frame = +2

Query: 176 FRTRNGNTEVASIDGIPA---DNVAFIHKNVKNWMFSN-FIIRPYFDQEFSLNEFIEASK 343
           +R  + + E+ ++ G+     +NV F+H++  NW   +   ++  FD  FS   + +A +
Sbjct: 132 YRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDIFSATRYTKALE 191

Query: 344 HAVQIVSGALQN-SDFK-TLEGLVD-KDAINALKTAVSQ 451
              ++     Q    FK  LE L   KDA   L+ +++Q
Sbjct: 192 VIKKLHKDQAQEIKTFKLKLENLQTLKDAAYKLRESIAQ 230


>At5g15680.1 68418.m01834 expressed protein 
          Length = 2151

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -3

Query: 658 PGTGAELLKILEACHRFPSYFSALLTHDNTL*FQPNAYPNHQKLLQLDKECIKYI 494
           P   A +  IL +CHR  +Y  ALLT   T     N   +   L Q   +CI Y+
Sbjct: 451 PKVKAAIESILRSCHR--TYSQALLTSSRTTIDAVNKEKSQGSLFQSVLKCIPYL 503


>At2g18810.1 68415.m02189 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 234

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -1

Query: 465 WDTES*DTAVFSALIASLSTKPSRVLKSLFCSAPETI*TACLEASMNSFRLNS 307
           W   S D   F+ +++     P++  + L   A  T+ TACLEAS ++  ++S
Sbjct: 169 WSFHSPDMLFFALVLSDPDLAPTKDWECLNLLAKLTVETACLEASQDADTMSS 221


>At2g36070.1 68415.m04429 mitochondrial import inner membrane
           translocase subunit TIM44, putative contains similarity
           to Swiss-Prot:O35857 import inner membrane translocase
           subunit TIM44, mitochondrial precursor [Mus musculus];
           contains Pfam domian PF04280: Mitochondrial import inner
           membrane, translocase subunit TIM44
          Length = 469

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 302 DQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAI 424
           D  FSL +F+   + A++ V  A    D KTL+    K+ I
Sbjct: 321 DPSFSLPDFVSEIQEAIRPVLNAYSKGDAKTLKKYCSKELI 361


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,829,735
Number of Sequences: 28952
Number of extensions: 281260
Number of successful extensions: 577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)