Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1198X
         (518 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7CRI5 Cluster: Helix-turn-helix-domain containing prot...    32   9.0  
UniRef50_Q5H9X6 Cluster: P0650D04.6 protein; n=6; Oryza sativa|R...    32   9.0  

>UniRef50_A7CRI5 Cluster: Helix-turn-helix-domain containing protein
           AraC type precursor; n=1; Opitutaceae bacterium
           TAV2|Rep: Helix-turn-helix-domain containing protein
           AraC type precursor - Opitutaceae bacterium TAV2
          Length = 372

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 115 FLXRGNRKRQSESECAVLERIRVVAGEPKRGFRDLL 222
           F  + +RKR+ E + A LER+R +A + + G RD L
Sbjct: 199 FAEKDHRKREFELDAAQLERLRAMAHDLEAGARDAL 234


>UniRef50_Q5H9X6 Cluster: P0650D04.6 protein; n=6; Oryza sativa|Rep:
           P0650D04.6 protein - Oryza sativa (Rice)
          Length = 542

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +1

Query: 157 CAVLERIRVVAGEPKRGFRDLLKRGR 234
           CA+ +RIR+V G+P RG  DLL  GR
Sbjct: 221 CAIYDRIRLVFGDPMRGL-DLLAIGR 245


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 429,213,600
Number of Sequences: 1657284
Number of extensions: 7494392
Number of successful extensions: 14146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14145
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)