Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1198X
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    31   0.14 
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    25   5.1  

>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
 Frame = -2

Query: 295 YG-GSYLVEVLKRVQVSHCILICRALVNPEIPA*APLLLRECVRVPRIHSRSV--SFYSP 125
           YG G YL  +L  + +SHC+L C  L N      A  +L   V + ++HS +V   +YS 
Sbjct: 135 YGLGVYLYSILILLFLSHCVLRC-CLSNWSWTHRAMFILHSMVILMKLHSYNVVNGWYSY 193

Query: 124 SXGTLNV*RNLVGSRIRSFTSKKICIKFKELHCL 23
              +LN    L   +      ++  ++F E HCL
Sbjct: 194 CYHSLN---KLQSKKTDLDDDERSSVEFYE-HCL 223


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 244 CILICRALVNPEIPA*APLLLRECVRVPRIHSRSVSFY 131
           CI     ++  +IP  A L++R  +RVP I  ++ +++
Sbjct: 80  CIQTTAFIIPVKIPHLATLIIRASLRVPLILEKAAAYF 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,834,836
Number of Sequences: 5004
Number of extensions: 33001
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)