Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1198X
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33822| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0022)               30   1.3  
SB_26235| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_49007| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=4.9)            28   5.3  
SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  

>SB_33822| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0022)
          Length = 229

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 181 RECVRVPRIHSRSVSFYSPSXGTLNV*RNLVGSRIRSFTSKKI 53
           REC R  RIH+R V F      T +  R+ +    +   S++I
Sbjct: 72  RECFRSYRIHTREVGFLEKHTDTCSTCRDQIADVTKEIASRRI 114


>SB_26235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 181 RECVRVPRIHSRSVSFYSPSXGTLNV*RNLVGSRIRSFTSKKI 53
           REC R  RIH+R V F      T +  R+ +    +   S++I
Sbjct: 72  RECFRSYRIHTREVGFLEKHTDTCSTCRDQIADVTKEIASRRI 114


>SB_49007| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=4.9)
          Length = 312

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -2

Query: 295 YGGSYLVEVLKRVQVSHCILICRALVNPEIPA*APLLLRECVRVPRIHSRSVSFY 131
           YG  Y + +   +   H +L  RAL    + A +  L REC    +++  SV  +
Sbjct: 174 YGAKYTIPLDHSLLTDHGVLYARALSEALLFASSQRLTRECQPAAKVYEWSVFLF 228


>SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1251

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 116 SXGGGIERDRARVNARYSNAF 178
           S GGG+ERDR  V   Y  AF
Sbjct: 867 SAGGGLERDRHNVQGIYYKAF 887


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,203,119
Number of Sequences: 59808
Number of extensions: 232294
Number of successful extensions: 480
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)