Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1198X
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65500.1 68418.m08240 protein kinase family protein contains ...    28   3.3  
At2g33670.1 68415.m04126 seven transmembrane MLO family protein ...    27   5.7  

>At5g65500.1 68418.m08240 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 765

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 307 ASRVKDQISKKKRSSENLERVRLRYGELIT 396
           +S+VK  +  K ++   LERV L+ GE+IT
Sbjct: 340 SSKVKTMMEAKSQAEVELERVVLQRGEMIT 369


>At2g33670.1 68415.m04126 seven transmembrane MLO family protein /
           MLO-like protein 5 (MLO5) identical to MLO-like protein
           5 (AtMlo5) [Arabidopsis thaliana] SWISS-PROT:O22815;
           similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]
          Length = 501

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 331 SKKKRSSENLERVRLRYGELITC*KEYIPLI 423
           SKK +++E+LER  L       C K Y+PLI
Sbjct: 112 SKKPKTTEHLERRVLADAAPAQCKKGYVPLI 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,318,289
Number of Sequences: 28952
Number of extensions: 165181
Number of successful extensions: 301
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)