Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1195
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 56 4e-08
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 56 4e-08
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 53 2e-07
10_08_0933 + 21661209-21662813 35 0.080
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 30 1.7
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104... 28 7.0
02_05_0550 + 29904733-29905596 28 9.2
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 28 9.2
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126... 28 9.2
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +1
Query: 268 TRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITC 444
T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE+LG+YL+
Sbjct: 70 TKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQ 129
Query: 445 G 447
G
Sbjct: 130 G 130
Score = 51.6 bits (118), Expect = 7e-07
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 74 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 241
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +1
Query: 268 TRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITC 444
T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE+LG+YL+
Sbjct: 70 TKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQ 129
Query: 445 G 447
G
Sbjct: 130 G 130
Score = 51.6 bits (118), Expect = 7e-07
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 74 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 241
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +1
Query: 259 IAGTRYIYLSGTDHI-IRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYL 435
+ GT+Y+ + G + IR K G G+ KT ++++ +Y+EP+ P Q +VE+LG+YL
Sbjct: 67 LGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYL 126
Query: 436 ITCG 447
I G
Sbjct: 127 IEQG 130
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 74 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 241
MSWQ YVD LM +T AAI GHDG+VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
>10_08_0933 + 21661209-21662813
Length = 534
Score = 34.7 bits (76), Expect = 0.080
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -1
Query: 342 HAMHADLAKLRADDMVCATEVDVPRARYRPPPLVSSDSFSKPAT 211
H++ A LA L AD++ DV R RPPP ++ SF P T
Sbjct: 344 HSLGASLAVLAADELSACLSADVAEHRRRPPP-IAVVSFGGPKT 386
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 285 QWHRPYHPRE-AWQ--GRRALHEDTASCGHFSL*RTHPTSAGRICRGEVRRIFNYLWLLE 455
+W R Y P W+ GRRA D S+ T PT GR+ E +I ++++LLE
Sbjct: 33 KWRRQYRPESICWEYEGRRAYIADYLDAKGRSILITKPTIKGRVSGKE--QIKHFVYLLE 90
>08_01_0130 +
1040696-1041049,1042135-1042275,1042422-1042673,
1043797-1043904,1044289-1044593,1044720-1044841,
1044979-1045225,1045308-1045365,1045414-1045530,
1045718-1045753,1046492-1046554,1046958-1047047,
1047241-1047399,1047475-1047596,1048145-1048217,
1048307-1048375
Length = 771
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 525 NAVTYFPWKKYYLIVLLDHGELRPLITTGN*IF 427
NA+ +KKY L+ L+ +G++ PL+ G IF
Sbjct: 548 NAIAVEAYKKYILVSLIQNGQI-PLLDKGESIF 579
>02_05_0550 + 29904733-29905596
Length = 287
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +3
Query: 237 C*RVAADDSGHAVHLPQWHRPYHPREAWQGRRALHEDTASCGHFSL*RTHPTSAGRICRG 416
C A G +HLP W R + + W A +E A+ RT P+ + C
Sbjct: 210 CAAAAESIRGAGMHLPPWRRARYVQAKWS---APYERVAAAAPPEGARTAPSGGRKRCGM 266
Query: 417 EVRR 428
E+ R
Sbjct: 267 EIGR 270
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -1
Query: 252 PPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAF 127
P V++DS++ + F + ++KP+ F HT + A+ ++
Sbjct: 120 PSFVTTDSYNLDTSPFLSDRSNMNKPNQFLHTSENGAAIGSY 161
>01_03_0278 -
14509481-14509506,14510700-14512291,14512547-14512638,
14513030-14514412
Length = 1030
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -1
Query: 342 HAMHADLAKLRADDMVCATEVDVPRARYRPPPLVSSDSFSKPATIFATSSFEISK 178
+ M L K+ D V TE++ R R++P PLVS + IF ++ ISK
Sbjct: 124 YRMDKRLCKIVHDIEVLVTEMNAFRFRFQPQPLVSMQWRQTDSEIFDPTNI-ISK 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,047,429
Number of Sequences: 37544
Number of extensions: 421001
Number of successful extensions: 932
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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