Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1195
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.027
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   33   0.33 
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  30   2.3  
SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0)                    28   9.4  

>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +2

Query: 122 VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESL 238
           V +AAI G DG+ WA S GF +S+ E  +++   ++ S+
Sbjct: 7   VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV 45



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = +1

Query: 253 RTIAGTRYIYLSGTDH--IIRAKLGKVGVHCM-KTQQAVVISLYEEPIQPQ-QAASVVEK 420
           +TI G +Y+ L       I   KL   G  C+  T+QA+VI  YEE         +VVE+
Sbjct: 48  KTIGGAKYMMLRNDQESKICYLKLKDKGGFCVCLTKQALVIGGYEESAGGAGNCNNVVEQ 107

Query: 421 LGEYLITCGY 450
           L +YL   GY
Sbjct: 108 LAQYLKESGY 117


>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 298 HIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 450
           H +  + G  G   + T Q ++I  Y E + P   ++V EKL +Y    G+
Sbjct: 521 HSLYCRKGNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVNGF 571


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 304 IRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLG 426
           +  K  K G+  +KT   ++++LY + + P       EKLG
Sbjct: 36  VYGKHDKTGIVAIKTATLILVALYSQEMSPSICVEASEKLG 76


>SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0)
          Length = 584

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -1

Query: 255 PPPLVSSDSFSKP----ATIFATSSFEISKPSDFAHTLPS*PAMAAFVTHLDAINCLST* 88
           PPPL+S+ + SKP    A   A S+  +S      H +P+ PA    +T  D+ + L + 
Sbjct: 319 PPPLLSNSTSSKPPMSLAESLAASTQPVSSLISSVHLMPA-PAQ-RHITTSDSFSSLKSI 376

Query: 87  SCQLI 73
           + Q +
Sbjct: 377 AAQAV 381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,496,091
Number of Sequences: 59808
Number of extensions: 493217
Number of successful extensions: 1206
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)