Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1195
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to p... 60 2e-09
At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to S... 56 3e-08
At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to p... 56 3e-08
At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identic... 53 2e-07
At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / aller... 51 7e-07
At1g62420.1 68414.m07042 expressed protein contains Pfam profile... 29 4.4
At1g12530.1 68414.m01451 hypothetical protein ; expression suppo... 29 4.4
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi... 28 7.7
At4g15370.1 68417.m02349 pentacyclic triterpene synthase, putati... 28 7.7
>At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to
profilin 4 SP:Q38905 GI:1353768 from [Arabidopsis
thaliana]
Length = 134
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +1
Query: 259 IAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYL 435
+AG +Y+ + G + +IR K G G+ KT Q++V LYEEP+ P Q VVE+LG+YL
Sbjct: 70 LAGLKYMVIQGEPNAVIRGKKGAGGITIKKTGQSMVFGLYEEPVTPGQCNMVVERLGDYL 129
Query: 436 ITCG 447
I G
Sbjct: 130 IEQG 133
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = +2
Query: 74 MSWQDYVDKQLMAS------RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 226
MSWQ YVD+ LM +T AAI GHDG+VWA+S F + E+ I+ F+
Sbjct: 1 MSWQAYVDEHLMCDVGDGQGHHLTAAAIIGHDGSVWAQSANFPQFKPQEITDIMKDFD 58
>At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to
SP|Q9FE63 Profilin 5 {Arabidopsis thaliana}
Length = 168
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 259 IAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYL 435
+ G +Y+ + G + +IR K G GV KT A+V +Y+EP+ P Q VVE LGEYL
Sbjct: 104 LGGNKYMVIQGEPNAVIRGKKGAGGVTIKKTTLALVFGIYDEPMTPGQCNMVVENLGEYL 163
Query: 436 ITCG 447
I G
Sbjct: 164 IESG 167
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +2
Query: 74 MSWQDYVDKQLM---ASRCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 241
MSWQ YVD LM A +T AAI G DG+VWA+S F ++ +E+ I F L
Sbjct: 38 MSWQTYVDDHLMCDVAGNRLTAAAILGQDGSVWAQSNNFPQVKPEEIQGIKDDFTTPGTL 97
>At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to
profilin 3 SP:Q38904 GI:1353765 from [Arabidopsis
thaliana]
Length = 134
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +1
Query: 259 IAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYL 435
+AG +Y+ + G +IR K G G+ KT Q+ V +YEEP+ P Q VVE+LG+YL
Sbjct: 70 MAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYL 129
Query: 436 ITCG 447
+ G
Sbjct: 130 LEQG 133
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = +2
Query: 74 MSWQDYVDKQLMAS------RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 226
MSWQ YVD+ LM +T AAI GHDG+VWA+S F + E + I+ F+
Sbjct: 1 MSWQTYVDEHLMCDVGDGQGHHLTAAAIVGHDGSVWAQSANFPQFKGQEFSDIMKDFD 58
>At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identical
to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis
thaliana]; identical to cDNA profilin (PRF2) GI:9965570
Length = 131
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 259 IAGTRYIYLSG-TDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYL 435
+ G +Y+ + G +IR K G GV KT QA+V +Y+EP+ Q VVE+LG+YL
Sbjct: 67 LGGEKYMVVQGEAGAVIRGKKGPGGVTIKKTTQALVFGIYDEPMTGGQCNLVVERLGDYL 126
Query: 436 ITCG 447
I G
Sbjct: 127 IESG 130
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +2
Query: 74 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 226
MSWQ YVD LM +T AAI G DG+VWA+S F ++ E+A I FE
Sbjct: 1 MSWQSYVDDHLMCEVEGNHLTHAAIFGQDGSVWAQSSAFPQLKPAEIAGINKDFE 55
>At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / allergen
Ara t 8 identical to profilin 1 (Allergen Ara t 8)
SP:Q42449 GI:1353770 from [Arabidopsis thaliana]
Length = 131
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +1
Query: 259 IAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYL 435
+ G +Y+ + G +IR K G GV KT QA+V Y+EP+ Q VVE+LG+YL
Sbjct: 67 LGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYL 126
Query: 436 I 438
I
Sbjct: 127 I 127
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +2
Query: 74 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 241
MSWQ YVD LM +T AAI G DG+VWA+S F ++ E+ I FE L
Sbjct: 1 MSWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFL 60
>At1g62420.1 68414.m07042 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 465
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = +3
Query: 273 VHLPQWHRPYHPREAWQGRRALHEDTASCGHFSL*RTHPTSAGRICRGE 419
+H+P W R + + W G ++ T++ ++ + T+ T+A + C+ E
Sbjct: 213 IHVPPWRRNGYMQAKWFG---FYKRTSTTNNYEMVNTYDTTAFKGCKEE 258
>At1g12530.1 68414.m01451 hypothetical protein ; expression
supported by MPSS
Length = 192
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 658 RIKRVQNPQNNHMCTLNSSH*LRRHNLSNIKTNERSSYHFIE 533
R+K ++ +NN + + S L+RH N+KT + S F E
Sbjct: 32 RLKENEDLRNNMISVVKESTSLKRHGAQNMKTRQLSDAIFEE 73
>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
thaliana]
Length = 1505
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/62 (22%), Positives = 26/62 (41%)
Frame = -3
Query: 658 RIKRVQNPQNNHMCTLNSSH*LRRHNLSNIKTNERSSYHFIEYTKCSYLFPVEKILSYST 479
R+ +V +P+ N+ C + ++ K E YH++ +KC L + Y
Sbjct: 243 RVCQVSDPERNYHCFYMLCA-APQEDVKKFKLEEPKKYHYLNQSKCLELDSINDAEEYHA 301
Query: 478 LR 473
R
Sbjct: 302 TR 303
>At4g15370.1 68417.m02349 pentacyclic triterpene synthase, putative
similar to pentacyclic triterpene synthase [gi:6650208]
[PMID:11247608]
Length = 759
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 636 GFWTLFIRSPSPQNNYYC-IMN*ICIKILLLLTSHSE 743
G W L + SPS N +C ++N IC++IL + H +
Sbjct: 164 GGWGLHVESPS---NMFCSVINYICLRILGVEAGHDD 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,128,955
Number of Sequences: 28952
Number of extensions: 332735
Number of successful extensions: 723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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