Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1194X
(498 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-... 164 1e-39
UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4; ... 145 4e-34
UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4; Endopterygot... 106 3e-22
UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular orga... 102 5e-21
UniRef50_P67809 Cluster: Nuclease sensitive element-binding prot... 101 1e-20
UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box prot... 100 2e-20
UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular o... 100 2e-20
UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular org... 99 3e-20
UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhanc... 100 4e-20
UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: ... 100 4e-20
UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona intesti... 95 6e-19
UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius auratus... 94 2e-18
UniRef50_O46173 Cluster: Y-box protein; n=5; cellular organisms|... 93 2e-18
UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias... 93 3e-18
UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21; Tetrapod... 93 3e-18
UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ ce... 92 7e-18
UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box fact... 89 4e-17
UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;... 82 8e-15
UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n... 75 9e-13
UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n... 69 8e-11
UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep: MG... 65 1e-09
UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;... 58 8e-08
UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box ... 58 8e-08
UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis el... 56 6e-07
UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n... 54 1e-06
UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia japo... 53 3e-06
UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1; ... 52 7e-06
UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;... 46 6e-04
UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triti... 46 6e-04
UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus laev... 45 8e-04
UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n... 42 0.006
UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep: AG... 42 0.010
UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=... 42 0.010
UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2; ... 42 0.010
UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep: ... 42 0.010
UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2; Bacteria... 41 0.013
UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella ve... 41 0.013
UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29; Bac... 41 0.013
UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome s... 41 0.018
UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA - Myxoco... 41 0.018
UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12; Bacteria... 41 0.018
UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2; Bacteroi... 40 0.023
UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:... 40 0.023
UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154; Ba... 40 0.023
UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7; Bact... 40 0.031
UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78; B... 40 0.041
UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein; ... 40 0.041
UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep: ... 40 0.041
UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28; Bac... 40 0.041
UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39; Gammapro... 40 0.041
UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3; ... 39 0.054
UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB... 39 0.072
UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp. M... 39 0.072
UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2; M... 39 0.072
UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n... 39 0.072
UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59; Alphapro... 39 0.072
UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein; ... 38 0.095
UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6; c... 38 0.095
UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38; Gam... 38 0.095
UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 - Brad... 38 0.13
UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3; Gammaproteobac... 38 0.13
UniRef50_Q87NH9 Cluster: Cold shock transcriptional regulator Cs... 38 0.17
UniRef50_Q5NP11 Cluster: Cold shock protein; n=1; Zymomonas mobi... 38 0.17
UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain ... 38 0.17
UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB... 38 0.17
UniRef50_A4EHC3 Cluster: Cold shock protein; n=1; Roseobacter sp... 37 0.22
UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1; ma... 37 0.22
UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus lu... 37 0.22
UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367; ro... 37 0.22
UniRef50_P72188 Cluster: Cold shock protein capA; n=23; Proteoba... 37 0.22
UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44; Bacteria... 37 0.29
UniRef50_Q2S3Y3 Cluster: 'Cold-shock' DNA-binding domain, putati... 37 0.29
UniRef50_Q0BPU3 Cluster: Cold shock protein; n=1; Granulibacter ... 37 0.29
UniRef50_A3YG84 Cluster: Cold-shock protein CspD; n=1; Marinomon... 37 0.29
UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1; ... 37 0.29
UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular... 37 0.29
UniRef50_P39158 Cluster: Cold shock protein cspC; n=41; Bacteria... 37 0.29
UniRef50_Q0YRJ0 Cluster: Cold-shock protein, DNA-binding; n=1; C... 36 0.38
UniRef50_Q0SKK0 Cluster: Cold shock protein; n=20; Bacteria|Rep:... 36 0.38
UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain ... 36 0.38
UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona intesti... 36 0.38
UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep... 36 0.38
UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26; cel... 36 0.38
UniRef50_Q7NNC3 Cluster: Gsr0488 protein; n=1; Gloeobacter viola... 36 0.51
UniRef50_Q8D046 Cluster: Cold shock protein; n=14; Enterobacteri... 36 0.51
UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein; ... 36 0.51
UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2; C... 36 0.51
UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2; ... 36 0.51
UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1; ... 36 0.51
UniRef50_Q9S1B7 Cluster: Cold shock-like protein cspA; n=10; Bac... 36 0.51
UniRef50_Q9I0L6 Cluster: Cold-shock protein CspD; n=12; Gammapro... 36 0.67
UniRef50_Q8YIC6 Cluster: COLD SHOCK PROTEIN CSPA; n=4; Brucella|... 36 0.67
UniRef50_Q89E28 Cluster: Cold shock protein; n=8; cellular organ... 36 0.67
UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein; ... 36 0.67
UniRef50_A4U251 Cluster: Cold shock DNA-binding domain protein; ... 36 0.67
UniRef50_A1ZFN2 Cluster: Conserved domain protein; n=2; Flexibac... 36 0.67
UniRef50_Q2JGE4 Cluster: Cold-shock DNA-binding domain protein; ... 35 0.88
UniRef50_Q4F6X8 Cluster: Cold shock protein; n=6; Gammaproteobac... 35 0.88
UniRef50_A6E2L2 Cluster: Cold-shock DNA-binding domain protein; ... 35 0.88
UniRef50_Q2LZN5 Cluster: GA14466-PA; n=3; Endopterygota|Rep: GA1... 35 0.88
UniRef50_Q9VRN5 Cluster: Lin-28 homolog; n=1; Drosophila melanog... 35 0.88
UniRef50_Q8G880 Cluster: Cold shock protein; n=3; Bifidobacteriu... 35 1.2
UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:... 35 1.2
UniRef50_Q5GRS9 Cluster: Cold shock protein; n=3; Wolbachia|Rep:... 35 1.2
UniRef50_Q5FNZ7 Cluster: Cold shock protein; n=1; Gluconobacter ... 35 1.2
UniRef50_Q1QLF4 Cluster: Cold-shock DNA-binding domain protein; ... 35 1.2
UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein; ... 35 1.2
UniRef50_Q4UBG6 Cluster: Cold shock protein, putative; n=2; Thei... 35 1.2
UniRef50_Q8KES2 Cluster: Cold shock-like protein CspG; n=9; Chlo... 34 1.5
UniRef50_Q2RNN9 Cluster: Cold-shock DNA-binding domain protein; ... 34 1.5
UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5; Deinoc... 34 1.5
UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein; ... 34 1.5
UniRef50_A3VSH0 Cluster: Cold shock protein; n=1; Parvularcula b... 34 1.5
UniRef50_A3J3Q2 Cluster: Cold shock protein; n=7; Flavobacterial... 34 1.5
UniRef50_O65639 Cluster: Glycine-rich protein; n=8; Magnoliophyt... 34 1.5
UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6; Streptoc... 34 1.5
UniRef50_P0A353 Cluster: Cold shock-like protein cspA; n=288; Ba... 34 1.5
UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep... 34 2.0
UniRef50_Q3VJZ1 Cluster: Cold-shock protein, DNA-binding precurs... 34 2.0
UniRef50_Q28L70 Cluster: Cold-shock DNA-binding domain protein; ... 34 2.0
UniRef50_Q11D48 Cluster: Cold-shock DNA-binding domain protein; ... 34 2.0
UniRef50_P0A971 Cluster: Cold shock-like protein cspD; n=12; Gam... 34 2.0
UniRef50_Q74BX3 Cluster: Cold shock domain family protein; n=13;... 33 2.7
UniRef50_Q0C0S6 Cluster: Cold shock DNA-binding protein; n=1; Hy... 33 2.7
UniRef50_A7HXE8 Cluster: Putative cold-shock DNA-binding domain ... 33 2.7
UniRef50_Q8I248 Cluster: Cold-shock protein, putative; n=3; Plas... 33 2.7
UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2; Acti... 33 3.6
UniRef50_Q982F0 Cluster: Cold-shock protein; n=3; Mesorhizobium ... 33 3.6
UniRef50_Q2I6N3 Cluster: Uncharacterized Gly-rich protein; n=3; ... 33 3.6
UniRef50_A5V9E9 Cluster: Putative cold-shock DNA-binding domain ... 33 3.6
UniRef50_A3S070 Cluster: Cold shock protein; n=1; Ralstonia sola... 33 3.6
UniRef50_Q9HSS3 Cluster: Cold shock protein; n=7; Halobacteriace... 33 3.6
UniRef50_UPI000150A0B6 Cluster: hypothetical protein TTHERM_0034... 33 4.7
UniRef50_Q9PA96 Cluster: Temperature acclimation protein B; n=24... 33 4.7
UniRef50_Q89KY2 Cluster: Bll4766 protein; n=5; Bradyrhizobiaceae... 33 4.7
UniRef50_Q2IPN0 Cluster: Putative uncharacterized protein precur... 33 4.7
UniRef50_A2TNS0 Cluster: Cold shock protein; n=4; Bacteroidetes|... 33 4.7
UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1; Ostre... 33 4.7
UniRef50_Q9VVA0 Cluster: CG9705-PA, isoform A; n=4; Diptera|Rep:... 33 4.7
UniRef50_Q9ZCP9 Cluster: Cold shock-like protein cspA; n=12; Bac... 33 4.7
UniRef50_UPI0000DA19CE Cluster: PREDICTED: similar to nuclease s... 32 6.2
UniRef50_Q835L0 Cluster: Cold-shock domain family protein; n=24;... 32 6.2
UniRef50_Q9ZAH1 Cluster: Cold shock protein C; n=10; Streptococc... 32 6.2
UniRef50_Q1GT29 Cluster: Cold-shock DNA-binding domain protein; ... 32 6.2
UniRef50_Q0M3I1 Cluster: Cold-shock protein, DNA-binding; n=1; C... 32 6.2
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 32 6.2
UniRef50_A0YBV1 Cluster: CspA-like protein; n=17; Proteobacteria... 32 6.2
UniRef50_Q5CXY4 Cluster: Elongation factor EF1-gamma; n=2; Crypt... 32 6.2
UniRef50_A5K4I2 Cluster: Putative uncharacterized protein; n=1; ... 32 6.2
UniRef50_Q4P173 Cluster: Putative uncharacterized protein; n=1; ... 32 6.2
UniRef50_P46449 Cluster: Cold shock-like protein cspD; n=31; Bac... 32 6.2
UniRef50_Q1RHK6 Cluster: Cold shock-like protein cspA; n=2; Rick... 32 6.2
UniRef50_UPI000155BD6F Cluster: PREDICTED: similar to Zinc finge... 32 8.2
UniRef50_UPI0001554E06 Cluster: PREDICTED: hypothetical protein;... 32 8.2
UniRef50_Q6N6T9 Cluster: Cold shock DNA binding protein; n=38; A... 32 8.2
UniRef50_Q5YVF2 Cluster: Putative cold shock protein; n=1; Nocar... 32 8.2
UniRef50_Q48H64 Cluster: Cold shock domain protein CspD; n=7; Pr... 32 8.2
UniRef50_Q0LHH2 Cluster: Putative uncharacterized protein; n=1; ... 32 8.2
UniRef50_Q0APJ7 Cluster: Cold-shock DNA-binding domain protein; ... 32 8.2
UniRef50_A4LXQ2 Cluster: Cold-shock DNA-binding domain protein; ... 32 8.2
UniRef50_A4A3Y7 Cluster: Cold-shock domain family protein; n=1; ... 32 8.2
UniRef50_A3UBK6 Cluster: Cold-shock DNA-binding domain protein; ... 32 8.2
>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
protein - Bombyx mori (Silk moth)
Length = 272
Score = 164 bits (398), Expect = 1e-39
Identities = 76/81 (93%), Positives = 77/81 (95%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK RG
Sbjct: 65 VHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 124
Query: 434 YHRQYFPRQRGGLGGVGAPRR 496
YHRQYFPRQ GG GG GAPRR
Sbjct: 125 YHRQYFPRQGGGRGGEGAPRR 145
Score = 72.1 bits (169), Expect = 6e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF
Sbjct: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 64
>UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4;
cellular organisms|Rep: Putative uncharacterized protein
- Lonomia obliqua (Moth)
Length = 254
Score = 145 bits (352), Expect = 4e-34
Identities = 69/81 (85%), Positives = 72/81 (88%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI RNNPRKAVRSVGDGE VEFAVVAGEKG EAAGVTGPGGEPVKGSPYAADK RG
Sbjct: 56 VHQTAIIRNNPRKAVRSVGDGEVVEFAVVAGEKGCEAAGVTGPGGEPVKGSPYAADKRRG 115
Query: 434 YHRQYFPRQRGGLGGVGAPRR 496
Y+RQY+PR GG GG G PRR
Sbjct: 116 YYRQYYPR-GGGRGGEGTPRR 135
Score = 72.1 bits (169), Expect = 6e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF
Sbjct: 24 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 55
>UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4;
Endopterygota|Rep: Y-box protein Ct-p50 - Chironomus
tentans (Midge)
Length = 317
Score = 106 bits (254), Expect = 3e-22
Identities = 52/70 (74%), Positives = 58/70 (82%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQ+AI +NNP+KAVRSVGDGE VEF VVAGEKG EAA VTGP GEPVKGSPYAADK RG
Sbjct: 57 VHQSAIIKNNPKKAVRSVGDGEVVEFDVVAGEKGSEAANVTGPEGEPVKGSPYAADKRRG 116
Query: 434 YHRQYFPRQR 463
+Y+ R R
Sbjct: 117 ---RYWSRNR 123
Score = 64.5 bits (150), Expect = 1e-09
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+IA KV+GTVKWFNVKSGYGFINRND K+D+F
Sbjct: 25 IIATKVTGTVKWFNVKSGYGFINRNDNKQDIF 56
>UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular
organisms|Rep: ENSANGP00000031633 - Anopheles gambiae
str. PEST
Length = 166
Score = 102 bits (244), Expect = 5e-21
Identities = 49/68 (72%), Positives = 55/68 (80%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQ+AIARNNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPVKGS YAA+K RG
Sbjct: 37 VHQSAIARNNPKKAVRSVGDGEQVEFDVVIGEKGNEAANVTGPQGEPVKGSQYAAEKRRG 96
Query: 434 YHRQYFPR 457
+ + R
Sbjct: 97 FRHWWQKR 104
Score = 62.5 bits (145), Expect = 5e-09
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV+G VKWFNVKSGYGFINR DT+EDVF
Sbjct: 5 VIATKVTGVVKWFNVKSGYGFINRGDTQEDVF 36
>UniRef50_P67809 Cluster: Nuclease sensitive element-binding protein
1; n=65; Coelomata|Rep: Nuclease sensitive
element-binding protein 1 - Homo sapiens (Human)
Length = 324
Score = 101 bits (241), Expect = 1e-20
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-09
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box protein
Ct-p40; n=1; Nasonia vitripennis|Rep: PREDICTED: similar
to Y-box protein Ct-p40 - Nasonia vitripennis
Length = 335
Score = 100 bits (240), Expect = 2e-20
Identities = 53/72 (73%), Positives = 55/72 (76%)
Frame = +2
Query: 260 QTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRGYH 439
Q I+ N P KAVRSVGDGE VEF VV GEKG EAA VTGP GE VKGSPYAADK RGY
Sbjct: 98 QRCISNNLPSKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPDGEAVKGSPYAADKRRGY- 156
Query: 440 RQYFPRQRGGLG 475
RQY+ R RGG G
Sbjct: 157 RQYYNR-RGGSG 167
Score = 54.0 bits (124), Expect = 2e-06
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+IA KV+GTVKWFNVKSGYGFINR+ D+F
Sbjct: 64 IIANKVTGTVKWFNVKSGYGFINRSVFHFDIF 95
>UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular
organisms|Rep: DNA-binding protein A - Homo sapiens
(Human)
Length = 372
Score = 100 bits (240), Expect = 2e-20
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADR-RR 176
Query: 434 YHRQYFPRQRG 466
Y R Y+ R+RG
Sbjct: 177 YRRGYYGRRRG 187
Score = 64.1 bits (149), Expect = 2e-09
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVF 117
>UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular
organisms|Rep: Y-box factor homolog - Aplysia
californica (California sea hare)
Length = 253
Score = 99 bits (238), Expect = 3e-20
Identities = 51/81 (62%), Positives = 59/81 (72%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G V+GS YAAD+ R
Sbjct: 60 VHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYAADRRRF 119
Query: 434 YHRQYFPRQRGGLGGVGAPRR 496
++PR RGG G G PR+
Sbjct: 120 RRGGWYPRFRGG-GRGGRPRQ 139
Score = 66.1 bits (154), Expect = 4e-10
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+IA +VSGTVKWFNVKSGYGFINR+DTKEDVF
Sbjct: 28 IIASQVSGTVKWFNVKSGYGFINRDDTKEDVF 59
>UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhancer
factor II; n=1; Gallus gallus|Rep: Rous sarcoma virus
transcription enhancer factor II - Gallus gallus
(Chicken)
Length = 298
Score = 99.5 bits (237), Expect = 4e-20
Identities = 49/71 (69%), Positives = 55/71 (77%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK + SVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 115 VHQTAIKKNNPRKYLASVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADR-RR 173
Query: 434 YHRQYFPRQRG 466
Y R YF R+RG
Sbjct: 174 YRRGYFGRRRG 184
Score = 64.1 bits (149), Expect = 2e-09
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 83 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVF 114
>UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: DNA
binding protein - Canis familiaris (Dog)
Length = 96
Score = 99.5 bits (237), Expect = 4e-20
Identities = 48/71 (67%), Positives = 56/71 (78%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE V+F VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 20 VHQTAIKKNNPRKYLRSVGDGETVQFDVVEGEKGAEAANVTGPDGVPVEGSRYAADR-RR 78
Query: 434 YHRQYFPRQRG 466
Y R Y+ R+RG
Sbjct: 79 YRRGYYGRRRG 89
Score = 42.7 bits (96), Expect = 0.004
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +3
Query: 198 NVKSGYGFINRNDTKEDVF 254
NV++GYGFINRNDTKEDVF
Sbjct: 1 NVRNGYGFINRNDTKEDVF 19
>UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona
intestinalis|Rep: Y-box protein 1/2/3 - Ciona
intestinalis (Transparent sea squirt)
Length = 320
Score = 95.5 bits (227), Expect = 6e-19
Identities = 48/71 (67%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEPVKGSPYAADKLR 430
+HQTAI +NNP+K +RSVGDGE VEF VV GEKG EAA VTGP GEPVKGS YAAD+ R
Sbjct: 53 IHQTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGLPEAANVTGPNGEPVKGSKYAADR-R 111
Query: 431 GYHRQYFPRQR 463
Y +Y PR +
Sbjct: 112 RYKPRYKPRPK 122
Score = 56.0 bits (129), Expect = 4e-07
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A SG VKWFNV++GYGF+NR+D KEDVF
Sbjct: 21 VLASHCSGVVKWFNVRNGYGFVNRDDNKEDVF 52
>UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius
auratus|Rep: Y box protein 2 - Carassius auratus
(Goldfish)
Length = 297
Score = 93.9 bits (223), Expect = 2e-18
Identities = 45/68 (66%), Positives = 53/68 (77%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV KG EAA VTGPGG PVKGS YA +K R
Sbjct: 48 VHQTAIKKNNPRKFLRSVGDGEVVEFDVVEAAKGSEAANVTGPGGIPVKGSRYAPNK-RR 106
Query: 434 YHRQYFPR 457
+ R+++PR
Sbjct: 107 FRRRFYPR 114
Score = 62.9 bits (146), Expect = 4e-09
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA V GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 16 VIATGVEGTVKWFNVRNGYGFINRNDTKEDVF 47
>UniRef50_O46173 Cluster: Y-box protein; n=5; cellular
organisms|Rep: Y-box protein - Drosophila melanogaster
(Fruit fly)
Length = 359
Score = 93.5 bits (222), Expect = 2e-18
Identities = 47/70 (67%), Positives = 55/70 (78%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQ+AIA NNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV+GS +AADK R
Sbjct: 90 VHQSAIA-NNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKRRN 148
Query: 434 YHRQYFPRQR 463
+ R + + R
Sbjct: 149 F-RPWMKKNR 157
Score = 67.3 bits (157), Expect = 2e-10
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVF
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTREDVF 89
>UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias
latipes|Rep: Cold-shock domain protein - Oryzias latipes
(Medaka fish) (Japanese ricefish)
Length = 366
Score = 93.1 bits (221), Expect = 3e-18
Identities = 44/68 (64%), Positives = 53/68 (77%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF V+ KG EAA VTGPGG PVKGS YA +K R
Sbjct: 30 VHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGPGGIPVKGSRYAPNK-RR 88
Query: 434 YHRQYFPR 457
+ R++FP+
Sbjct: 89 FRRRFFPQ 96
Score = 59.3 bits (137), Expect = 5e-08
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKEDVF 254
V GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 3 VQGTVKWFNVRNGYGFINRNDTKEDVF 29
>UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21;
Tetrapoda|Rep: Y-box-binding protein 2 - Homo sapiens
(Human)
Length = 364
Score = 93.1 bits (221), Expect = 3e-18
Identities = 45/68 (66%), Positives = 52/68 (76%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA ++ +
Sbjct: 121 VHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS 180
Query: 434 YHRQYFPR 457
R++ PR
Sbjct: 181 --RRFIPR 186
Score = 61.7 bits (143), Expect = 9e-09
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A +V GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINRNDTKEDVF 120
>UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ
cell-specific Y-box-binding protein) (Contrin) (MSY2
homolog).; n=1; Xenopus tropicalis|Rep: Y-box-binding
protein 2 (Germ cell-specific Y-box-binding protein)
(Contrin) (MSY2 homolog). - Xenopus tropicalis
Length = 199
Score = 91.9 bits (218), Expect = 7e-18
Identities = 49/76 (64%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Frame = +2
Query: 263 TAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRGYHR 442
TAI RNNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PVKGS +A ++ R R
Sbjct: 70 TAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFAPNRRRFRRR 129
Query: 443 QYFPR--QRGGLGGVG 484
Y PR G GG G
Sbjct: 130 FYRPRADTAGESGGEG 145
>UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box factor;
n=4; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to Y-Box factor - Strongylocentrotus purpuratus
Length = 326
Score = 89.4 bits (212), Expect = 4e-17
Identities = 47/71 (66%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQ+AI RNNPRK RSVGDGE VEF VV G KG EAA VTGP G PV GS YAADK R
Sbjct: 51 VHQSAIVRNNPRKYQRSVGDGEVVEFDVVEGTKGNEAARVTGPEGAPVVGSKYAADKRRY 110
Query: 434 YHR-QYFPRQR 463
R +Y+ R+R
Sbjct: 111 RGRPRYYRRRR 121
Score = 65.7 bits (153), Expect = 5e-10
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A KVSGTVKWFNVK+GYGFINR+DTKEDVF
Sbjct: 19 VLATKVSGTVKWFNVKNGYGFINRDDTKEDVF 50
>UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-1 - Caenorhabditis elegans
Length = 208
Score = 81.8 bits (193), Expect = 8e-15
Identities = 44/81 (54%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK-LR 430
+HQTAI NNP K +RS+GD E V F +V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 48 VHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAADRDAE 107
Query: 431 GYHRQYFPRQRGGLGGVGAPR 493
R R RG GG G R
Sbjct: 108 NAARGRGGRGRGRRGGRGGIR 128
Score = 59.3 bits (137), Expect = 5e-08
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V A KV GTVKWFNVK+GYGFINR DT ED+F
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIF 47
>UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B3F UniRef100 entry -
Rattus norvegicus
Length = 292
Score = 74.9 bits (176), Expect = 9e-13
Identities = 36/63 (57%), Positives = 44/63 (69%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTA+ +N+PRK +RSVGD E VEF V GEK EAA VTG GG PV+ S Y AD+
Sbjct: 58 VHQTAMKKNDPRKYLRSVGDAETVEFDFVEGEKDVEAASVTGLGGVPVQDSKYTADRNHC 117
Query: 434 YHR 442
H+
Sbjct: 118 KHQ 120
Score = 43.6 bits (98), Expect = 0.003
Identities = 22/32 (68%), Positives = 24/32 (75%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GT+K V +G G INRNDTKEDVF
Sbjct: 26 VIATKVLGTMKCSIVWNGCGLINRNDTKEDVF 57
>UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC181B UniRef100 entry -
Rattus norvegicus
Length = 210
Score = 68.5 bits (160), Expect = 8e-11
Identities = 33/55 (60%), Positives = 40/55 (72%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 418
+HQTAI +NNPRK + + GD E VEF V+ GEK EAA + GPGG V+GS YAA
Sbjct: 56 VHQTAIKKNNPRKYLHTTGDRETVEFDVIEGEKDAEAANIIGPGG--VQGSQYAA 108
>UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep:
MGC115344 protein - Xenopus laevis (African clawed frog)
Length = 221
Score = 64.9 bits (151), Expect = 1e-09
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 31 VLATKVQGTVKWFNVRNGYGFINRNDTKEDVF 62
Score = 48.0 bits (109), Expect = 1e-04
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +2
Query: 350 KGFEAAGVTGPGGEPVKGSPYAADKLRGYHRQYFPRQRG 466
+G EAA VTGP G PV+GS YAAD+ R Y R Y+ ++RG
Sbjct: 65 QGAEAANVTGPKGAPVQGSRYAADR-RRYRRGYYGQRRG 102
>UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-4 - Caenorhabditis elegans
Length = 294
Score = 58.4 bits (135), Expect = 8e-08
Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +2
Query: 254 LHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLR 430
+HQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS +A L
Sbjct: 119 VHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFARTLLT 178
Query: 431 GYHRQYFPRQRG-GLGGVGAPRR 496
+ + RG G G GAPR+
Sbjct: 179 HWRTRGRGGARGRGGRGRGAPRQ 201
Score = 34.3 bits (75), Expect = 1.5
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVF 254
VI V G VKWF+V+ YGF+ R+ D ED F
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFF 118
>UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box
protein - Dugesia japonica (Planarian)
Length = 266
Score = 58.4 bits (135), Expect = 8e-08
Identities = 30/63 (47%), Positives = 40/63 (63%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQ+AI ++NP +SVG+GE + F +V G KG EAA V+ G+ VKGS YA RG
Sbjct: 56 IHQSAIVKSNPDHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYALRYPRG 115
Query: 434 YHR 442
R
Sbjct: 116 RGR 118
Score = 49.2 bits (112), Expect = 5e-05
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKEDVF 254
++G VKWFNVK GYGF+ RND +ED+F
Sbjct: 29 ITGKVKWFNVKRGYGFVCRNDNQEDIF 55
>UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis
elegans|Rep: Y-box protein 2 - Caenorhabditis elegans
Length = 267
Score = 55.6 bits (128), Expect = 6e-07
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +2
Query: 254 LHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLR 430
+HQTAIA++ K +R++GD E V F +V G+ G EAA VTGP G+ V GS Y L
Sbjct: 93 VHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRYRHKLLS 152
Query: 431 GYHRQYFPR 457
+ + PR
Sbjct: 153 RFRKNRKPR 161
Score = 39.5 bits (88), Expect = 0.041
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFCIRLPSPVTTHVRLCARSATER 320
I + G VKW++V YGFI+RND ++D+F H A+SATE+
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIF---------VHQTAIAKSATEK 105
>UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B82 UniRef100 entry -
Rattus norvegicus
Length = 147
Score = 54.4 bits (125), Expect = 1e-06
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV G V WFNV++GY FINRNDTKED F
Sbjct: 91 VIAMKVLGIVTWFNVRNGYVFINRNDTKEDTF 122
Score = 34.7 bits (76), Expect = 1.2
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVE 328
+HQT I +NNP K + SVGDGE VE
Sbjct: 123 VHQTVIKKNNP-KYLHSVGDGETVE 146
>UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia
japonica|Rep: Y-Box factor protein - Dugesia japonica
(Planarian)
Length = 178
Score = 53.2 bits (122), Expect = 3e-06
Identities = 28/54 (51%), Positives = 36/54 (66%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 415
+HQ+AI+R P K +S+G+ E V F VV G KG EA VTGP G+ V GS +A
Sbjct: 30 VHQSAISRCQPGKQ-KSLGEDEDVLFDVVKGSKGNEAMNVTGPNGDAVLGSKFA 82
Score = 46.4 bits (105), Expect = 4e-04
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G VKW+NVK GYGFI+R+D EDVF
Sbjct: 5 GKVKWYNVKKGYGFIHRDDVDEDVF 29
>UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 192
Score = 52.0 bits (119), Expect = 7e-06
Identities = 28/63 (44%), Positives = 39/63 (61%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+H++ I + N +S+GDGE VEF ++A + VTGPG +PVKGSP+ A RG
Sbjct: 61 VHKSCIFKPNRNHFTKSIGDGEIVEFGLIASK-------VTGPGFKPVKGSPFVAK--RG 111
Query: 434 YHR 442
HR
Sbjct: 112 GHR 114
Score = 50.8 bits (116), Expect = 2e-05
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 165 AEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+++++GTVKWFN K G+GFI R+DT ED+F
Sbjct: 31 SKRITGTVKWFNAKDGFGFITRHDTGEDIF 60
>UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein - Ornithorhynchus anatinus
Length = 502
Score = 45.6 bits (103), Expect = 6e-04
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFC--IRLPSPVTTHVRLCARSATERRWSL 332
V+A +V GTVKWFNV++GYGFINR + C P T R +R+ L
Sbjct: 56 VLATQVLGTVKWFNVRNGYGFINRYRSAPGCGCGSRGRGGPSTRGARSASRAPDNPAKLL 115
Query: 333 PWLP 344
P+ P
Sbjct: 116 PFSP 119
>UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triticum
aestivum|Rep: Cold shock domain protein 3 - Triticum
aestivum (Wheat)
Length = 231
Score = 45.6 bits (103), Expect = 6e-04
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+ E+V GTVKWFNV G+GFI+ +D ED+F
Sbjct: 1 MGERVKGTVKWFNVTKGFGFISPDDGGEDLF 31
>UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus
laevis|Rep: LOC100036881 protein - Xenopus laevis
(African clawed frog)
Length = 131
Score = 45.2 bits (102), Expect = 8e-04
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 9/69 (13%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKG--FEAAGVTGPGGEPVKGSP-----YAADKLRGYHRQ--YF 451
RS+ +GE VEF+V+ E+ +AA VTGP G V+G+P + D+ G RQ Y
Sbjct: 42 RSLAEGEPVEFSVITDERSGKLKAADVTGPNGAAVRGAPRREGGFGGDRGYGGGRQGGYD 101
Query: 452 PRQRGGLGG 478
++GG GG
Sbjct: 102 SGRQGGYGG 110
Score = 40.3 bits (90), Expect = 0.023
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 171 KVSGTVKWFNVKSGYGFINRNDTKEDVF 254
K++GT KWFN + GYGF+ +D D+F
Sbjct: 3 KLTGTCKWFNAEKGYGFLTPDDGSPDIF 30
>UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n=1;
unknown|Rep: UPI00015BD510 UniRef100 entry - unknown
Length = 86
Score = 42.3 bits (95), Expect = 0.006
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKEDVF 254
++GTVKWF+ + GYGF+ R+D + DVF
Sbjct: 18 ITGTVKWFSKEKGYGFLTRDDNQGDVF 44
>UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep:
AGR_C_161p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 163
Score = 41.5 bits (93), Expect = 0.010
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVKWFN GYGFI +D +DVF
Sbjct: 97 TGTVKWFNATKGYGFIQPDDGSQDVF 122
>UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=1;
uncultured bacterium BAC17H8|Rep: Predicted cold shock
family protein - uncultured bacterium BAC17H8
Length = 83
Score = 41.5 bits (93), Expect = 0.010
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVKWFN + GYGFIN ++ DVF
Sbjct: 18 GTVKWFNTQKGYGFINPDEDGNDVF 42
>UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 238
Score = 41.5 bits (93), Expect = 0.010
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 165 AEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+E+V GTVKWF+ G+GFI +D ED+F
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLF 32
Score = 34.7 bits (76), Expect = 1.2
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPV 397
RS+ DG+ VEF+V +G G +A VT PGG V
Sbjct: 44 RSLNDGDVVEFSVGSGNDGRTKAVNVTAPGGRAV 77
>UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep:
Lin-28 homolog B - Homo sapiens (Human)
Length = 250
Score = 41.5 bits (93), Expect = 0.010
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 406
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 75 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2;
Bacteria|Rep: Conserved domain protein - Stigmatella
aurantiaca DW4/3-1
Length = 100
Score = 41.1 bits (92), Expect = 0.013
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVFC 257
+GTVKWFN G+GFI ++ EDVFC
Sbjct: 36 TGTVKWFNDAKGFGFITQDGGGEDVFC 62
>UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 671
Score = 41.1 bits (92), Expect = 0.013
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+G+VKWFN+ G+GFI R+D EDVF
Sbjct: 484 TGSVKWFNLIKGFGFITRDDGGEDVF 509
Score = 34.7 bits (76), Expect = 1.2
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 406
+HQ+AI + RS+ +GE V+ + +KG A VT PGG VKG+
Sbjct: 510 VHQSAIKASG----YRSLEEGEHVQLTISNSDKGKVAICVTSPGGGNVKGA 556
>UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29;
Bacteria|Rep: Cold shock-like protein cspA - Stigmatella
aurantiaca
Length = 68
Score = 41.1 bits (92), Expect = 0.013
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVFC 257
+GTVKWFN G+GFI ++ EDVFC
Sbjct: 3 TGTVKWFNDAKGFGFITQDGGGEDVFC 29
>UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome
shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 14
SCAF14723, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 206
Score = 40.7 bits (91), Expect = 0.018
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 406
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 111 RSLKEGEQVEFTFKKSTKGLESLRVTGPGGGPCAGS 146
Score = 32.7 bits (71), Expect = 4.7
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVFCIRLPSPVTTHVRLCARSATERRWS 329
SG KWFNV+ G+GFI+ T + + P V H + R+A W+
Sbjct: 8 SGFCKWFNVRMGFGFISM--THSEGSPVDPPLDVFVHQSVGGRNAKFPLWA 56
>UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA -
Myxococcus xanthus
Length = 68
Score = 40.7 bits (91), Expect = 0.018
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVFC 257
+GTVKWFN G+GFI ++D DVFC
Sbjct: 3 TGTVKWFNDAKGFGFIAQDDGGADVFC 29
>UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12;
Bacteria|Rep: Cold shock protein CspA - Pseudomonas
stutzeri (strain A1501)
Length = 136
Score = 40.7 bits (91), Expect = 0.018
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+AE+ +GTVKWFN GYGFI R + DVF
Sbjct: 67 VMAERETGTVKWFNDAKGYGFIQRGN-GADVF 97
Score = 33.9 bits (74), Expect = 2.0
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTG 379
RS+ +G+ VEF+V+ G+KG +A V G
Sbjct: 109 RSLAEGQQVEFSVIQGQKGLQAEDVAG 135
>UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2;
Bacteroidetes/Chlorobi group|Rep: Conserved domain
protein - Salinibacter ruber (strain DSM 13855)
Length = 110
Score = 40.3 bits (90), Expect = 0.023
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+ TVKWF+ K GYGFI+ D EDVF
Sbjct: 3 TSTVKWFDAKKGYGFIHHPDDGEDVF 28
>UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:
Cold shock protein - Oceanobacter sp. RED65
Length = 171
Score = 40.3 bits (90), Expect = 0.023
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G VKWFNVK G+GFI R D EDVF
Sbjct: 108 GLVKWFNVKKGFGFITR-DNGEDVF 131
>UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154;
Bacteria|Rep: Cold shock-like protein cspG - Shigella
flexneri
Length = 70
Score = 40.3 bits (90), Expect = 0.023
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
++ K++G VKWFN G+GFI +D +DVF
Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVF 31
>UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7;
Bacteria|Rep: Cold shock-like protein cspJ - Salmonella
typhimurium
Length = 70
Score = 39.9 bits (89), Expect = 0.031
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +3
Query: 171 KVSGTVKWFNVKSGYGFINRNDTKEDVF 254
K++G VKWFN + G+GFI D +DVF
Sbjct: 4 KITGLVKWFNPEKGFGFITPKDGSKDVF 31
>UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78;
Bacteria|Rep: Cold shock DNA binding protein -
Rhodopseudomonas palustris
Length = 84
Score = 39.5 bits (88), Expect = 0.041
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVKWFN GYGFI +D DVF
Sbjct: 18 GTVKWFNATKGYGFIQPDDGGNDVF 42
>UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein;
n=30; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 249
Score = 39.5 bits (88), Expect = 0.041
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3
Query: 168 EKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
E+ SGTVK+FN G+GFI R+D + D F
Sbjct: 179 ERTSGTVKFFNTTKGFGFIARDDGQADAF 207
Score = 37.1 bits (82), Expect = 0.22
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVK+FN G+GF+ R+D EDVF
Sbjct: 86 GTVKFFNPSKGFGFVARDDGGEDVF 110
>UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep:
Cold shock protein - Arthrobacter globiformis
Length = 67
Score = 39.5 bits (88), Expect = 0.041
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVKWFN + G+GFI +D+ DVF
Sbjct: 4 GTVKWFNAEKGFGFITPDDSDGDVF 28
>UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28;
Bacteria|Rep: Cold shock-like protein cspE - Shigella
flexneri
Length = 69
Score = 39.5 bits (88), Expect = 0.041
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 171 KVSGTVKWFNVKSGYGFINRNDTKEDVF 254
K+ G VKWFN G+GFI D +DVF
Sbjct: 3 KIKGNVKWFNESKGFGFITPEDGSKDVF 30
>UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39;
Gammaproteobacteria|Rep: Cold shock protein cspA -
Salmonella typhimurium
Length = 70
Score = 39.5 bits (88), Expect = 0.041
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +3
Query: 171 KVSGTVKWFNVKSGYGFINRNDTKEDVF 254
K++G VKWFN G+GFI +D +DVF
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVF 31
>UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3;
Bacteria|Rep: Cold-shock domain family protein -
Neptuniibacter caesariensis
Length = 149
Score = 39.1 bits (87), Expect = 0.054
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3
Query: 168 EKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
++ GTVKWFNV G+GFI R + +DVF
Sbjct: 81 DREQGTVKWFNVSKGFGFITRGE-DDDVF 108
>UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB -
Myxococcus xanthus
Length = 66
Score = 38.7 bits (86), Expect = 0.072
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVFC 257
GTVKWFN G+GFI D EDVFC
Sbjct: 4 GTVKWFNDAKGFGFI-AQDNGEDVFC 28
>UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp.
MED297|Rep: Cold shock protein - Reinekea sp. MED297
Length = 153
Score = 38.7 bits (86), Expect = 0.072
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 168 EKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
++ G VKWFNV G+GF+ R D EDVF
Sbjct: 84 DREEGLVKWFNVSKGFGFVTR-DNGEDVF 111
>UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2;
Marinomonas|Rep: Cold-shock protein, DNA-binding -
Marinomonas sp. MED121
Length = 79
Score = 38.7 bits (86), Expect = 0.072
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+ +K+ GTVKWFN G GFI R D + DVF
Sbjct: 1 MTDKLKGTVKWFNDSKGVGFIQR-DNEADVF 30
>UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n=2;
cellular organisms|Rep: Cold shock NA binding domain
protein - Aspergillus clavatus
Length = 125
Score = 38.7 bits (86), Expect = 0.072
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 168 EKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
E+ +GTVKWFN + GYGFI +T ED+F
Sbjct: 58 ERQNGTVKWFNDEKGYGFIT-PETGEDLF 85
>UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59;
Alphaproteobacteria|Rep: Cold shock protein cspA -
Rhizobium meliloti (Sinorhizobium meliloti)
Length = 69
Score = 38.7 bits (86), Expect = 0.072
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
SGTVKWFN G+GFI +D DVF
Sbjct: 3 SGTVKWFNSTKGFGFIQPDDGATDVF 28
>UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 70
Score = 38.3 bits (85), Expect = 0.095
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVKWFNV+ G+GFI +D D F
Sbjct: 3 TGTVKWFNVQKGFGFIAPDDGGSDAF 28
>UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6;
cellular organisms|Rep: Cold-shock protein, DNA-binding
- Enterococcus faecium DO
Length = 35
Score = 38.3 bits (85), Expect = 0.095
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVKWFN + G+GFI+R D DVF
Sbjct: 3 NGTVKWFNAEKGFGFISRED-GSDVF 27
>UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38;
Gammaproteobacteria|Rep: Cold shock-like protein cspC -
Shigella flexneri
Length = 69
Score = 38.3 bits (85), Expect = 0.095
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 171 KVSGTVKWFNVKSGYGFINRNDTKEDVF 254
K+ G VKWFN G+GFI D +DVF
Sbjct: 3 KIKGQVKWFNESKGFGFITPADGSKDVF 30
>UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 -
Bradyrhizobium japonicum
Length = 120
Score = 37.9 bits (84), Expect = 0.13
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVKWFN GYGF+ +D +DVF
Sbjct: 56 GTVKWFNPTKGYGFVAPDDGGKDVF 80
>UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3;
Gammaproteobacteria|Rep: Cold shock protein - Vibrio
angustum S14
Length = 68
Score = 37.9 bits (84), Expect = 0.13
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +3
Query: 171 KVSGTVKWFNVKSGYGFINRNDTKEDVF 254
K++GTVKWFN G+GFI+ D K DVF
Sbjct: 3 KLTGTVKWFNDDKGFGFISGTDGK-DVF 29
>UniRef50_Q87NH9 Cluster: Cold shock transcriptional regulator CspA;
n=21; Bacteria|Rep: Cold shock transcriptional regulator
CspA - Vibrio parahaemolyticus
Length = 70
Score = 37.5 bits (83), Expect = 0.17
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFCIRLPSPVTT 284
++ K +G+VKWFN G+GFI+ + ED+F + S V+T
Sbjct: 1 MSNKSTGSVKWFNETKGFGFISPENGGEDLF-VHFQSIVST 40
>UniRef50_Q5NP11 Cluster: Cold shock protein; n=1; Zymomonas
mobilis|Rep: Cold shock protein - Zymomonas mobilis
Length = 174
Score = 37.5 bits (83), Expect = 0.17
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 183 TVKWFNVKSGYGFINRNDTKEDVF 254
TVKWFN GYGF+ RN ++D+F
Sbjct: 108 TVKWFNRTKGYGFLIRNADQQDIF 131
>UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain
protein; n=3; Methylobacterium extorquens PA1|Rep:
Putative cold-shock DNA-binding domain protein -
Methylobacterium extorquens PA1
Length = 69
Score = 37.5 bits (83), Expect = 0.17
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVKWFN GYGFI ++ +DVF
Sbjct: 3 TGTVKWFNETKGYGFIQPDNGGKDVF 28
>UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB
fold; n=2; Cryptosporidium|Rep: Cold shock RNA binding
domain of the OB fold - Cryptosporidium parvum Iowa II
Length = 135
Score = 37.5 bits (83), Expect = 0.17
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLG 475
RS+ E VE+ + +KG +A V+GP G PVKG + RG R R RGG G
Sbjct: 49 RSLAQDERVEYEIETDDKGRRKAVNVSGPNGAPVKGD-RRRGRGRGRGRGMRGRGRGGRG 107
Score = 35.5 bits (78), Expect = 0.67
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKEDVF 254
+SG KWF+ G+GFI +D ED+F
Sbjct: 11 LSGVCKWFDSTKGFGFITPDDGSEDIF 37
>UniRef50_A4EHC3 Cluster: Cold shock protein; n=1; Roseobacter sp.
CCS2|Rep: Cold shock protein - Roseobacter sp. CCS2
Length = 151
Score = 37.1 bits (82), Expect = 0.22
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+ E++ VKWF+ GYGF+N ED+F
Sbjct: 80 VLEERIPVRVKWFDPSKGYGFVNAFGCAEDIF 111
>UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Cold-shock
DNA-binding protein - marine gamma proteobacterium
HTCC2143
Length = 144
Score = 37.1 bits (82), Expect = 0.22
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKE 245
GTVKWFNV GYGF+ R +E
Sbjct: 79 GTVKWFNVSKGYGFVTRASGEE 100
>UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 106
Score = 37.1 bits (82), Expect = 0.22
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+A + G VKWFN G+GFI +D E++F
Sbjct: 1 MATRARGKVKWFNATKGFGFIIPHDGSEEIF 31
Score = 35.9 bits (79), Expect = 0.51
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 409
+HQT I+ RSV +GE VE+ V + +A VTGP G VKG+P
Sbjct: 32 VHQTGISC----AGFRSVWEGEEVEYDVDDTDFAPKAVNVTGPDGVAVKGAP 79
>UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367;
root|Rep: Cold shock-like protein cspB - Yersinia
enterocolitica
Length = 70
Score = 37.1 bits (82), Expect = 0.22
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
++ K++G VKWF+ G+GFI+ D +DVF
Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVF 31
>UniRef50_P72188 Cluster: Cold shock protein capA; n=23;
Proteobacteria|Rep: Cold shock protein capA -
Pseudomonas fragi
Length = 64
Score = 37.1 bits (82), Expect = 0.22
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
++++ SGTVKWFN + G+GFI +D+F
Sbjct: 1 MSQRQSGTVKWFNDEKGFGFITPQGGGDDLF 31
>UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44;
Bacteria|Rep: Cold shock-like protein - Acinetobacter
sp. (strain ADP1)
Length = 69
Score = 36.7 bits (81), Expect = 0.29
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
++ V+GTVKWFN G+GFI + D+ DVF
Sbjct: 1 MSNSVNGTVKWFNEVKGFGFI-QQDSGPDVF 30
>UniRef50_Q2S3Y3 Cluster: 'Cold-shock' DNA-binding domain, putative;
n=1; Salinibacter ruber DSM 13855|Rep: 'Cold-shock'
DNA-binding domain, putative - Salinibacter ruber
(strain DSM 13855)
Length = 69
Score = 36.7 bits (81), Expect = 0.29
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVKWF+ GYGF+ ++ ++DVF
Sbjct: 3 TGTVKWFSPAEGYGFVEPDNGEDDVF 28
>UniRef50_Q0BPU3 Cluster: Cold shock protein; n=1; Granulibacter
bethesdensis CGDNIH1|Rep: Cold shock protein -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 100
Score = 36.7 bits (81), Expect = 0.29
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVKWFN GYGFI + ++DVF
Sbjct: 35 GTVKWFNPTKGYGFIAPSTGEKDVF 59
>UniRef50_A3YG84 Cluster: Cold-shock protein CspD; n=1; Marinomonas
sp. MED121|Rep: Cold-shock protein CspD - Marinomonas
sp. MED121
Length = 92
Score = 36.7 bits (81), Expect = 0.29
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVKWFN GYGFI +ED+F
Sbjct: 4 GTVKWFNNAKGYGFIVSESFEEDLF 28
>UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 189
Score = 36.7 bits (81), Expect = 0.29
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +3
Query: 165 AEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+++ +GTVKWF+ + G+GFI +D ED+F
Sbjct: 4 SKRSTGTVKWFSGQKGFGFIAPDDGGEDLF 33
>UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular
organisms|Rep: Glycine-rich protein 2b - Arabidopsis
thaliana (Mouse-ear cress)
Length = 201
Score = 36.7 bits (81), Expect = 0.29
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 168 EKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
++ GTVKWF+ + G+GFI +D +D+F
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLF 41
>UniRef50_P39158 Cluster: Cold shock protein cspC; n=41;
Bacteria|Rep: Cold shock protein cspC - Bacillus
subtilis
Length = 66
Score = 36.7 bits (81), Expect = 0.29
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVKWFN + G+GFI R + +DVF
Sbjct: 4 GTVKWFNAEKGFGFIER-ENGDDVF 27
>UniRef50_Q0YRJ0 Cluster: Cold-shock protein, DNA-binding; n=1;
Chlorobium ferrooxidans DSM 13031|Rep: Cold-shock
protein, DNA-binding - Chlorobium ferrooxidans DSM 13031
Length = 70
Score = 36.3 bits (80), Expect = 0.38
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+G VKWF+V+ G+GFI + ED+F
Sbjct: 2 VNGKVKWFDVRKGFGFILNPNGGEDIF 28
>UniRef50_Q0SKK0 Cluster: Cold shock protein; n=20; Bacteria|Rep:
Cold shock protein - Rhodococcus sp. (strain RHA1)
Length = 119
Score = 36.3 bits (80), Expect = 0.38
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTV+WFN + G+GF+ D +D+F
Sbjct: 55 TGTVRWFNAEQGFGFLAPADGSDDIF 80
>UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain
protein precursor; n=1; Methylobacterium sp. 4-46|Rep:
Putative cold-shock DNA-binding domain protein precursor
- Methylobacterium sp. 4-46
Length = 242
Score = 36.3 bits (80), Expect = 0.38
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 171 KVSGTVKWFNVKSGYGFINRNDTKEDVFCIR 263
++SGTVKW++ G+GF++ D +DVF R
Sbjct: 175 EMSGTVKWYDPAKGFGFVSVKDGGKDVFVHR 205
Score = 33.1 bits (72), Expect = 3.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 183 TVKWFNVKSGYGFINRNDTKEDVF 254
TVKWFN + G+GF+ D D F
Sbjct: 65 TVKWFNKEKGFGFVELGDGSGDAF 88
>UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona
intestinalis|Rep: Zinc finger protein - Ciona
intestinalis (Transparent sea squirt)
Length = 193
Score = 36.3 bits (80), Expect = 0.38
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 406
+HQ++I + RS+ +G+ V+F +KG EA V GPGGE + G+
Sbjct: 57 VHQSSI----DMEGFRSLQEGDRVKFWYKPSKKGLEAVKVVGPGGEKLVGA 103
Score = 31.9 bits (69), Expect = 8.2
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFI---NRNDTKEDVF 254
G KWFN K GYGFI + K DVF
Sbjct: 29 GNCKWFNSKQGYGFITPDTSSQEKTDVF 56
>UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep:
Protein lin-28 - Caenorhabditis elegans
Length = 227
Score = 36.3 bits (80), Expect = 0.38
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G+ KWFNV GYGF+ + T ED+F
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLF 79
>UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26;
cellular organisms|Rep: Cold shock-like protein cspC -
Bacillus anthracis
Length = 65
Score = 36.3 bits (80), Expect = 0.38
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKEDVF 254
+ G VKWFN + G+GFI R D +DVF
Sbjct: 1 MQGRVKWFNAEKGFGFIERED-GDDVF 26
>UniRef50_Q7NNC3 Cluster: Gsr0488 protein; n=1; Gloeobacter
violaceus|Rep: Gsr0488 protein - Gloeobacter violaceus
Length = 65
Score = 35.9 bits (79), Expect = 0.51
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +3
Query: 186 VKWFNVKSGYGFINRNDTKEDVFCI 260
V+WF++++GYG I R+DT E+VF +
Sbjct: 2 VRWFDLQAGYGAIARDDTGEEVFLL 26
>UniRef50_Q8D046 Cluster: Cold shock protein; n=14;
Enterobacteriaceae|Rep: Cold shock protein - Yersinia
pestis
Length = 77
Score = 35.9 bits (79), Expect = 0.51
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G VKWFN GYGFI+ +D DV+
Sbjct: 14 GRVKWFNQSEGYGFISPHDGGSDVY 38
>UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein;
n=5; cellular organisms|Rep: Cold-shock DNA-binding
domain protein - Psychrobacter cryohalolentis (strain
K5)
Length = 71
Score = 35.9 bits (79), Expect = 0.51
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
++ + G VKWFN G+GFI R D+ ED+F
Sbjct: 1 MSAREQGIVKWFNDSKGFGFIQR-DSGEDIF 30
Score = 33.5 bits (73), Expect = 2.7
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGV 373
RS+ DGE VEF+VV G+KG +A V
Sbjct: 42 RSLKDGEKVEFSVVEGDKGLQAEEV 66
>UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2;
Clostridium|Rep: Cold-shock protein, DNA-binding -
Clostridium phytofermentans ISDg
Length = 70
Score = 35.9 bits (79), Expect = 0.51
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVKW++ + GYGF++ ND + DVF
Sbjct: 5 TGTVKWYDSERGYGFVSTNDGR-DVF 29
>UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2;
cellular organisms|Rep: Putative uncharacterized protein
- Ruminococcus obeum ATCC 29174
Length = 66
Score = 35.9 bits (79), Expect = 0.51
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVKWFN + GYGFI D DVF
Sbjct: 4 GTVKWFNAEKGYGFITGED-GADVF 27
>UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 75
Score = 35.9 bits (79), Expect = 0.51
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRND 236
++E + GTVKWF+ + GYGFI D
Sbjct: 1 MSETLQGTVKWFSAQKGYGFITGED 25
>UniRef50_Q9S1B7 Cluster: Cold shock-like protein cspA; n=10;
Bacteria|Rep: Cold shock-like protein cspA - Shewanella
violacea
Length = 70
Score = 35.9 bits (79), Expect = 0.51
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+++ +GTVKWFN G+GF+ +++ DVF
Sbjct: 1 MSDSNTGTVKWFNEDKGFGFLTQDNGGADVF 31
>UniRef50_Q9I0L6 Cluster: Cold-shock protein CspD; n=12;
Gammaproteobacteria|Rep: Cold-shock protein CspD -
Pseudomonas aeruginosa
Length = 90
Score = 35.5 bits (78), Expect = 0.67
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKEDVF 254
+SG VKWFN GYGFI ED+F
Sbjct: 2 LSGKVKWFNNAKGYGFILAEGRDEDLF 28
>UniRef50_Q8YIC6 Cluster: COLD SHOCK PROTEIN CSPA; n=4;
Brucella|Rep: COLD SHOCK PROTEIN CSPA - Brucella
melitensis
Length = 101
Score = 35.5 bits (78), Expect = 0.67
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVKWFN G+GFI + DVF
Sbjct: 35 TGTVKWFNTTKGFGFIQPDQGGTDVF 60
>UniRef50_Q89E28 Cluster: Cold shock protein; n=8; cellular
organisms|Rep: Cold shock protein - Bradyrhizobium
japonicum
Length = 67
Score = 35.5 bits (78), Expect = 0.67
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVKWFN GYGFI +DVF
Sbjct: 5 GTVKWFNPTKGYGFIQPASGGKDVF 29
>UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein;
n=13; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Frankia sp. (strain CcI3)
Length = 67
Score = 35.5 bits (78), Expect = 0.67
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVKWFN + G+GFI+ + DVF
Sbjct: 4 GTVKWFNAEKGFGFISVDGGGPDVF 28
>UniRef50_A4U251 Cluster: Cold shock DNA-binding domain protein;
n=3; Magnetospirillum|Rep: Cold shock DNA-binding domain
protein - Magnetospirillum gryphiswaldense
Length = 209
Score = 35.5 bits (78), Expect = 0.67
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V V+ TVKWFN G+GF+ +D D F
Sbjct: 47 VTQTNVTATVKWFNASKGFGFVAPSDGTPDAF 78
Score = 32.3 bits (70), Expect = 6.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 165 AEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+E V G VK+F+ + G+GF+ + +DVF
Sbjct: 141 SETVEGVVKFFSAEKGFGFVQTDQGGKDVF 170
>UniRef50_A1ZFN2 Cluster: Conserved domain protein; n=2;
Flexibacteraceae|Rep: Conserved domain protein -
Microscilla marina ATCC 23134
Length = 64
Score = 35.5 bits (78), Expect = 0.67
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G VK+F GYGFI +DT ED+F
Sbjct: 4 GVVKFFKEDKGYGFITNSDTGEDIF 28
>UniRef50_Q2JGE4 Cluster: Cold-shock DNA-binding domain protein;
n=9; Bacteria|Rep: Cold-shock DNA-binding domain protein
- Frankia sp. (strain CcI3)
Length = 67
Score = 35.1 bits (77), Expect = 0.88
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVKWFN + G+GFI+ + DVF
Sbjct: 4 GTVKWFNSEKGFGFISVDGGGSDVF 28
>UniRef50_Q4F6X8 Cluster: Cold shock protein; n=6;
Gammaproteobacteria|Rep: Cold shock protein -
Pseudomonas fluorescens
Length = 69
Score = 35.1 bits (77), Expect = 0.88
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
++ + +GTVKWFN + G+GFI +D+F
Sbjct: 1 MSNRQTGTVKWFNDEKGFGFITPQGGGDDLF 31
>UniRef50_A6E2L2 Cluster: Cold-shock DNA-binding domain protein;
n=19; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Roseovarius sp. TM1035
Length = 68
Score = 35.1 bits (77), Expect = 0.88
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVKWFN G+GFI ++ +DVF
Sbjct: 3 NGTVKWFNSTKGFGFIAPDNGGKDVF 28
>UniRef50_Q2LZN5 Cluster: GA14466-PA; n=3; Endopterygota|Rep:
GA14466-PA - Drosophila pseudoobscura (Fruit fly)
Length = 168
Score = 35.1 bits (77), Expect = 0.88
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G KWFNV G+GF+ ND ++VF
Sbjct: 23 GKCKWFNVAKGWGFLTPNDGGQEVF 47
>UniRef50_Q9VRN5 Cluster: Lin-28 homolog; n=1; Drosophila
melanogaster|Rep: Lin-28 homolog - Drosophila
melanogaster (Fruit fly)
Length = 195
Score = 35.1 bits (77), Expect = 0.88
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G KWFNV G+GF+ ND ++VF
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVF 65
>UniRef50_Q8G880 Cluster: Cold shock protein; n=3;
Bifidobacterium|Rep: Cold shock protein -
Bifidobacterium longum
Length = 79
Score = 34.7 bits (76), Expect = 1.2
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVK+F K G+GFI +D EDVF
Sbjct: 4 GTVKFFLAKKGFGFIQPDDGGEDVF 28
>UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:
Cold shock protein - Methylococcus capsulatus
Length = 69
Score = 34.7 bits (76), Expect = 1.2
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
++++ GTVKWFN G+GFI R + D+F
Sbjct: 1 MSQQQQGTVKWFNESKGFGFIQR-ENGSDLF 30
>UniRef50_Q5GRS9 Cluster: Cold shock protein; n=3; Wolbachia|Rep:
Cold shock protein - Wolbachia sp. subsp. Brugia malayi
(strain TRS)
Length = 84
Score = 34.7 bits (76), Expect = 1.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G +KWFN + GYGFI D+F
Sbjct: 4 GNIKWFNAEKGYGFIKPEANGNDIF 28
>UniRef50_Q5FNZ7 Cluster: Cold shock protein; n=1; Gluconobacter
oxydans|Rep: Cold shock protein - Gluconobacter oxydans
(Gluconobacter suboxydans)
Length = 96
Score = 34.7 bits (76), Expect = 1.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVKWFN G+GFI ++ +D F
Sbjct: 31 TGTVKWFNSTKGFGFIQPDNGGQDAF 56
>UniRef50_Q1QLF4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Nitrobacter hamburgensis X14|Rep: Cold-shock
DNA-binding domain protein - Nitrobacter hamburgensis
(strain X14 / DSM 10229)
Length = 68
Score = 34.7 bits (76), Expect = 1.2
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+G+VK+FN + GYGFI +D D+F
Sbjct: 3 TGSVKFFNAEKGYGFIQPDDGTPDIF 28
>UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein;
n=1; Ostreococcus tauri|Rep: Putative nucleic acid
binding protein - Ostreococcus tauri
Length = 125
Score = 34.7 bits (76), Expect = 1.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G VKWFN G+G+I +D + DVF
Sbjct: 13 GKVKWFNCTKGFGYITPDDGEPDVF 37
>UniRef50_Q4UBG6 Cluster: Cold shock protein, putative; n=2;
Theileria|Rep: Cold shock protein, putative - Theileria
annulata
Length = 95
Score = 34.7 bits (76), Expect = 1.2
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 171 KVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+++G KWFN K GYGFI + EDVF
Sbjct: 3 RLNGVCKWFNNKKGYGFITL-ENGEDVF 29
>UniRef50_Q8KES2 Cluster: Cold shock-like protein CspG; n=9;
Chlorobiaceae|Rep: Cold shock-like protein CspG -
Chlorobium tepidum
Length = 97
Score = 34.3 bits (75), Expect = 1.5
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +3
Query: 186 VKWFNVKSGYGFINRNDTKEDVF 254
VKWF+ K GYGFI D ED+F
Sbjct: 6 VKWFDGKKGYGFILNPDGGEDIF 28
>UniRef50_Q2RNN9 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 210
Score = 34.3 bits (75), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+ TVKWFN G+GF+ +D + D F
Sbjct: 6 TATVKWFNATKGFGFVRVSDGEPDAF 31
>UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5;
Deinococci|Rep: Cold shock protein homolog - Thermus
thermophilus
Length = 73
Score = 34.3 bits (75), Expect = 1.5
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G VKWFN + GYGFI R + DVF
Sbjct: 4 GRVKWFNAEKGYGFIER-EGDTDVF 27
>UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein;
n=2; Marinomonas|Rep: Cold-shock DNA-binding domain
protein - Marinomonas sp. MED121
Length = 97
Score = 34.3 bits (75), Expect = 1.5
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKEDVF 254
VSG VKWFN + G+GFI R + DVF
Sbjct: 33 VSGIVKWFNDEKGFGFIER-EGGPDVF 58
>UniRef50_A3VSH0 Cluster: Cold shock protein; n=1; Parvularcula
bermudensis HTCC2503|Rep: Cold shock protein -
Parvularcula bermudensis HTCC2503
Length = 173
Score = 34.3 bits (75), Expect = 1.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 183 TVKWFNVKSGYGFINRNDTKEDVF 254
TVKWF+ GYGF+ + ED+F
Sbjct: 108 TVKWFSRAKGYGFLTATNANEDIF 131
>UniRef50_A3J3Q2 Cluster: Cold shock protein; n=7;
Flavobacteriales|Rep: Cold shock protein - Flavobacteria
bacterium BAL38
Length = 66
Score = 34.3 bits (75), Expect = 1.5
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+G VK+FN GYGFI ++T +D+F
Sbjct: 3 TGKVKFFNESKGYGFITDDETGKDIF 28
>UniRef50_O65639 Cluster: Glycine-rich protein; n=8;
Magnoliophyta|Rep: Glycine-rich protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 299
Score = 34.3 bits (75), Expect = 1.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 165 AEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
A + +G V WFN GYGFI +D ++F
Sbjct: 8 AARSTGKVNWFNASKGYGFITPDDGSVELF 37
Score = 33.9 bits (74), Expect = 2.0
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVK 400
+HQ++I + RS+ G+AVEFA+ G G +A VT PGG +K
Sbjct: 38 VHQSSIVS----EGYRSLTVGDAVEFAITQGSDGKTKAVNVTAPGGGSLK 83
>UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6;
Streptococcus thermophilus|Rep: Cold shock protein CspSt
- Streptococcus thermophilus
Length = 21
Score = 34.3 bits (75), Expect = 1.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRND 236
+GTVKWFN + G+GFI D
Sbjct: 2 NGTVKWFNAEKGFGFITSED 21
>UniRef50_P0A353 Cluster: Cold shock-like protein cspA; n=288;
Bacteria|Rep: Cold shock-like protein cspA - Bordetella
bronchiseptica (Alcaligenes bronchisepticus)
Length = 67
Score = 34.3 bits (75), Expect = 1.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+G VKWFN + GYGFI +D+F
Sbjct: 3 TGVVKWFNAEKGYGFITPEAGGKDLF 28
>UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep:
Cold shock protein B - Streptomyces coelicolor
Length = 127
Score = 33.9 bits (74), Expect = 2.0
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+G VKWFN + G+GF++R+D DVF
Sbjct: 3 TGKVKWFNSEKGFGFLSRDD-GGDVF 27
>UniRef50_Q3VJZ1 Cluster: Cold-shock protein, DNA-binding precursor;
n=2; Bacteroidetes/Chlorobi group|Rep: Cold-shock
protein, DNA-binding precursor - Pelodictyon
phaeoclathratiforme BU-1
Length = 91
Score = 33.9 bits (74), Expect = 2.0
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVKWFN G+GFI ++ DVF
Sbjct: 26 TGTVKWFNKMKGFGFIIPDNGGADVF 51
>UniRef50_Q28L70 Cluster: Cold-shock DNA-binding domain protein;
n=11; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Jannaschia sp. (strain CCS1)
Length = 68
Score = 33.9 bits (74), Expect = 2.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVKWFN G+GFI +DVF
Sbjct: 3 NGTVKWFNSTKGFGFIAPETGGKDVF 28
>UniRef50_Q11D48 Cluster: Cold-shock DNA-binding domain protein;
n=11; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Mesorhizobium sp. (strain BNC1)
Length = 69
Score = 33.9 bits (74), Expect = 2.0
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVK+FN G+GFI +D DVF
Sbjct: 4 GTVKFFNATKGFGFIQPDDGAADVF 28
>UniRef50_P0A971 Cluster: Cold shock-like protein cspD; n=12;
Gammaproteobacteria|Rep: Cold shock-like protein cspD -
Shigella flexneri
Length = 74
Score = 33.9 bits (74), Expect = 2.0
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVKWFN G+GFI ED+F
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIF 28
>UniRef50_Q74BX3 Cluster: Cold shock domain family protein; n=13;
cellular organisms|Rep: Cold shock domain family protein
- Geobacter sulfurreducens
Length = 66
Score = 33.5 bits (73), Expect = 2.7
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G VKWFN G+GFI + D EDVF
Sbjct: 4 GRVKWFNDAKGFGFIEQ-DNGEDVF 27
>UniRef50_Q0C0S6 Cluster: Cold shock DNA-binding protein; n=1;
Hyphomonas neptunium ATCC 15444|Rep: Cold shock
DNA-binding protein - Hyphomonas neptunium (strain ATCC
15444)
Length = 175
Score = 33.5 bits (73), Expect = 2.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 183 TVKWFNVKSGYGFINRNDTKEDVF 254
T+KWFN GYGF+ R+ + D+F
Sbjct: 112 TLKWFNRTRGYGFVLRDGQETDIF 135
>UniRef50_A7HXE8 Cluster: Putative cold-shock DNA-binding domain
protein; n=1; Parvibaculum lavamentivorans DS-1|Rep:
Putative cold-shock DNA-binding domain protein -
Parvibaculum lavamentivorans DS-1
Length = 199
Score = 33.5 bits (73), Expect = 2.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 186 VKWFNVKSGYGFINRNDTKEDVF 254
VKWFN GYGF+ R + D+F
Sbjct: 138 VKWFNRARGYGFVTRGEGTPDIF 160
Score = 32.3 bits (70), Expect = 6.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDV 251
++ +++G VKWF+ GYGFI + +DV
Sbjct: 34 VSFEITGVVKWFDAVKGYGFIIPENGGDDV 63
>UniRef50_Q8I248 Cluster: Cold-shock protein, putative; n=3;
Plasmodium|Rep: Cold-shock protein, putative -
Plasmodium falciparum (isolate 3D7)
Length = 150
Score = 33.5 bits (73), Expect = 2.7
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 168 EKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+K++G V F+ + GYGFI ND D+F
Sbjct: 28 DKITGNVIMFDKRKGYGFIKPNDGGPDIF 56
>UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2;
Actinomycetales|Rep: Putative DNA-binding protein -
Streptomyces coelicolor
Length = 162
Score = 33.1 bits (72), Expect = 3.6
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +2
Query: 284 PRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGE 391
P ++VRS G VEF V +GE+G +A+G+ P GE
Sbjct: 57 PEESVRS---GLVVEFEVESGERGLKASGIRLPEGE 89
>UniRef50_Q982F0 Cluster: Cold-shock protein; n=3; Mesorhizobium
loti|Rep: Cold-shock protein - Rhizobium loti
(Mesorhizobium loti)
Length = 97
Score = 33.1 bits (72), Expect = 3.6
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVKW+ + G+GFI ++ ++DVF
Sbjct: 33 GTVKWYKPEKGFGFIAPDNGEKDVF 57
>UniRef50_Q2I6N3 Cluster: Uncharacterized Gly-rich protein; n=3;
cellular organisms|Rep: Uncharacterized Gly-rich protein
- uncultured delta proteobacterium DeepAnt-1F12
Length = 1293
Score = 33.1 bits (72), Expect = 3.6
Identities = 24/75 (32%), Positives = 27/75 (36%)
Frame = +2
Query: 266 AIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRGYHRQ 445
A P + G+ A A AGE G AAG GP GE AD RG +
Sbjct: 184 AAGEAGPAGEAGAAGEAGAAGEAGAAGEAG--AAGEAGPAGEAGAAGEAGADGARGPAGE 241
Query: 446 YFPRQRGGLGGVGAP 490
P G G P
Sbjct: 242 AGPAGEAGAAGEAGP 256
Score = 33.1 bits (72), Expect = 3.6
Identities = 24/75 (32%), Positives = 27/75 (36%)
Frame = +2
Query: 266 AIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRGYHRQ 445
A P + G+ A A AGE G AAG GP GE AD RG +
Sbjct: 610 AAGEAGPAGEAGAAGEAGAAGEAGAAGEAG--AAGEAGPAGEAGAAGEAGADGARGPAGE 667
Query: 446 YFPRQRGGLGGVGAP 490
P G G P
Sbjct: 668 AGPAGEAGAAGEAGP 682
>UniRef50_A5V9E9 Cluster: Putative cold-shock DNA-binding domain
protein; n=1; Sphingomonas wittichii RW1|Rep: Putative
cold-shock DNA-binding domain protein - Sphingomonas
wittichii RW1
Length = 198
Score = 33.1 bits (72), Expect = 3.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 165 AEKVSGTVKWFNVKSGYGFINRNDTKEDV 251
AE V G VKWF+ G+GFI + + DV
Sbjct: 31 AETVVGAVKWFDATRGFGFIATDGDRGDV 59
Score = 32.7 bits (71), Expect = 4.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 186 VKWFNVKSGYGFINRNDTKEDVF 254
VKWFN GYGF+ R+ +D+F
Sbjct: 137 VKWFNRLKGYGFLVRDGETQDIF 159
>UniRef50_A3S070 Cluster: Cold shock protein; n=1; Ralstonia
solanacearum UW551|Rep: Cold shock protein - Ralstonia
solanacearum UW551
Length = 82
Score = 33.1 bits (72), Expect = 3.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVKWFN G+GFI + D+F
Sbjct: 45 TGTVKWFNETKGFGFITPDGGGADLF 70
>UniRef50_Q9HSS3 Cluster: Cold shock protein; n=7;
Halobacteriaceae|Rep: Cold shock protein - Halobacterium
salinarium (Halobacterium halobium)
Length = 74
Score = 33.1 bits (72), Expect = 3.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+G V +FN GYGFI D EDVF
Sbjct: 13 TGEVDFFNDTGGYGFIETEDADEDVF 38
>UniRef50_UPI000150A0B6 Cluster: hypothetical protein
TTHERM_00340170; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00340170 - Tetrahymena
thermophila SB210
Length = 864
Score = 32.7 bits (71), Expect = 4.7
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 168 EKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
EK GT+K+F+ YGFI ++++ D+F
Sbjct: 617 EKYKGTLKFFDQDKNYGFIVEDESRTDIF 645
>UniRef50_Q9PA96 Cluster: Temperature acclimation protein B; n=24;
Bacteria|Rep: Temperature acclimation protein B -
Xylella fastidiosa
Length = 85
Score = 32.7 bits (71), Expect = 4.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRND 236
GTVKWFN G+GFI N+
Sbjct: 23 GTVKWFNDNKGFGFITSNN 41
>UniRef50_Q89KY2 Cluster: Bll4766 protein; n=5;
Bradyrhizobiaceae|Rep: Bll4766 protein - Bradyrhizobium
japonicum
Length = 743
Score = 32.7 bits (71), Expect = 4.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 287 RKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 406
R R++GDG+ +G AG +G GGE V G+
Sbjct: 52 RTRARAIGDGDTARLRAPSGAPAGNGAGSSGSGGEAVAGN 91
>UniRef50_Q2IPN0 Cluster: Putative uncharacterized protein
precursor; n=1; Anaeromyxobacter dehalogenans 2CP-C|Rep:
Putative uncharacterized protein precursor -
Anaeromyxobacter dehalogenans (strain 2CP-C)
Length = 760
Score = 32.7 bits (71), Expect = 4.7
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = -3
Query: 349 LPGNHGKLHRLSVADRAHSLTWVVTGDGSLMQNTSSLVSFLLMKPYPLLTLNHFTVPD 176
LPG+ G L A R ++LT VTG+G S+ V+ YP+ + FTVPD
Sbjct: 271 LPGSSGTLTETPDATRTYTLT--VTGEGGQTVARSATVTV-----YPVPVIRSFTVPD 321
>UniRef50_A2TNS0 Cluster: Cold shock protein; n=4;
Bacteroidetes|Rep: Cold shock protein - Dokdonia
donghaensis MED134
Length = 82
Score = 32.7 bits (71), Expect = 4.7
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G VK+FN K G+GFI +++ E+VF
Sbjct: 21 GKVKFFNTKKGFGFIAIDNSDEEVF 45
>UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1;
Ostreococcus tauri|Rep: Glycogen debranching enzyme -
Ostreococcus tauri
Length = 141
Score = 32.7 bits (71), Expect = 4.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 186 VKWFNVKSGYGFINRNDTKEDVF 254
V WFN GYG++ +D EDVF
Sbjct: 44 VTWFNCVRGYGYVRPHDGSEDVF 66
>UniRef50_Q9VVA0 Cluster: CG9705-PA, isoform A; n=4; Diptera|Rep:
CG9705-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 143
Score = 32.7 bits (71), Expect = 4.7
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKEDVFC 257
V+G VK F+ G+GFI N EDVFC
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFC 82
>UniRef50_Q9ZCP9 Cluster: Cold shock-like protein cspA; n=12;
Bacteria|Rep: Cold shock-like protein cspA - Rickettsia
prowazekii
Length = 70
Score = 32.7 bits (71), Expect = 4.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+A + G VKW+N +GFI +++ +DVF
Sbjct: 1 MATNIVGKVKWYNSTKNFGFIEQDNGGKDVF 31
>UniRef50_UPI0000DA19CE Cluster: PREDICTED: similar to nuclease
sensitive element binding protein 1; n=1; Rattus
norvegicus|Rep: PREDICTED: similar to nuclease sensitive
element binding protein 1 - Rattus norvegicus
Length = 90
Score = 32.3 bits (70), Expect = 6.2
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 347 EKGFEAAGVTGPGGEPVKGSPYAA 418
+KG +A TGPGG PV+G YAA
Sbjct: 6 KKGPDAENDTGPGGAPVQGRKYAA 29
>UniRef50_Q835L0 Cluster: Cold-shock domain family protein; n=24;
Bacteria|Rep: Cold-shock domain family protein -
Enterococcus faecalis (Streptococcus faecalis)
Length = 66
Score = 32.3 bits (70), Expect = 6.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVKWFN G+GFI + DVF
Sbjct: 3 TGTVKWFNSDKGFGFITA-ENGNDVF 27
>UniRef50_Q9ZAH1 Cluster: Cold shock protein C; n=10;
Streptococcaceae|Rep: Cold shock protein C - Lactococcus
lactis
Length = 66
Score = 32.3 bits (70), Expect = 6.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVFCIRL 266
G + WFN GYGFI +D +DVF L
Sbjct: 4 GKINWFNADKGYGFIMADD-MQDVFAYLL 31
>UniRef50_Q1GT29 Cluster: Cold-shock DNA-binding domain protein;
n=1; Sphingopyxis alaskensis|Rep: Cold-shock DNA-binding
domain protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 90
Score = 32.3 bits (70), Expect = 6.2
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTVK+FN GYGFI D D F
Sbjct: 26 GTVKFFNNDKGYGFIENEDGSGDSF 50
>UniRef50_Q0M3I1 Cluster: Cold-shock protein, DNA-binding; n=1;
Caulobacter sp. K31|Rep: Cold-shock protein, DNA-binding
- Caulobacter sp. K31
Length = 201
Score = 32.3 bits (70), Expect = 6.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 171 KVSGTVKWFNVKSGYGFINRND 236
++SG VKWF+ GYGFI +D
Sbjct: 17 RISGRVKWFDTGKGYGFIVPDD 38
Score = 31.9 bits (69), Expect = 8.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 186 VKWFNVKSGYGFINRNDTKEDVF 254
VKWFN GYGF+ R+ D+F
Sbjct: 138 VKWFNRTKGYGFVVRDGQPGDIF 160
>UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=6;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - alpha proteobacterium HTCC2255
Length = 531
Score = 32.3 bits (70), Expect = 6.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKEDVF 254
++GTV W+N G GFIN + +DVF
Sbjct: 2 LTGTVIWYNPVKGLGFINPDQGGDDVF 28
>UniRef50_A0YBV1 Cluster: CspA-like protein; n=17;
Proteobacteria|Rep: CspA-like protein - marine gamma
proteobacterium HTCC2143
Length = 91
Score = 32.3 bits (70), Expect = 6.2
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVKWFN G+GFI DVF
Sbjct: 3 TGTVKWFNNAKGFGFILPEGGGADVF 28
>UniRef50_Q5CXY4 Cluster: Elongation factor EF1-gamma; n=2;
Cryptosporidium|Rep: Elongation factor EF1-gamma -
Cryptosporidium parvum Iowa II
Length = 382
Score = 32.3 bits (70), Expect = 6.2
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 293 PYVGCYGRWQSDAKHIFLGVIPVDETISTLDVEPF 189
PY YGR SDA H+ + + +D T+S+L V F
Sbjct: 74 PYTNLYGRTDSDATHVDMILQYIDTTLSSLVVPLF 108
>UniRef50_A5K4I2 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 1041
Score = 32.3 bits (70), Expect = 6.2
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -3
Query: 301 AHSLTWVVTGDGSLMQNTSSLVSFLLMKPYPLLTLNHFT 185
AHSL +VVT + S+ + ++ FL++ + LLT+ FT
Sbjct: 385 AHSLNYVVTNNNSITDISDYIILFLVIDMFGLLTILIFT 423
>UniRef50_Q4P173 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 327
Score = 32.3 bits (70), Expect = 6.2
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +2
Query: 326 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVGAP 490
+ AV++ + + A G G GG G Y A G H Y +Q GG GG GAP
Sbjct: 28 DVAVMSNQYSYAAGGGGGGGGGG--GGGYGAPPA-GQHGGYGQQQYGGGGGYGAP 79
>UniRef50_P46449 Cluster: Cold shock-like protein cspD; n=31;
Bacteria|Rep: Cold shock-like protein cspD - Haemophilus
influenzae
Length = 72
Score = 32.3 bits (70), Expect = 6.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G VKWFN G+GFI+ D+F
Sbjct: 4 GIVKWFNNAKGFGFISAEGVDADIF 28
>UniRef50_Q1RHK6 Cluster: Cold shock-like protein cspA; n=2;
Rickettsia bellii RML369-C|Rep: Cold shock-like protein
cspA - Rickettsia bellii (strain RML369-C)
Length = 70
Score = 32.3 bits (70), Expect = 6.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKEDVFCIR 263
+ G VKWFN +GFI + + +DVF R
Sbjct: 5 IVGKVKWFNPTKNFGFIEQENGGKDVFVHR 34
>UniRef50_UPI000155BD6F Cluster: PREDICTED: similar to Zinc finger,
matrin type 5, partial; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to Zinc finger, matrin
type 5, partial - Ornithorhynchus anatinus
Length = 277
Score = 31.9 bits (69), Expect = 8.2
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Frame = +2
Query: 242 GRCVLHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP--YA 415
GR + ++ R+ GDG A K +G GPGGE + Y
Sbjct: 183 GRSGVPDPPVSPGTRRRIGGRAGDGAGPCDAHNLDRKPAPGSG-PGPGGEREREHRRRYL 241
Query: 416 ADKLRGYHRQYFPRQRGGLGGVGAPRR 496
+ RG+ R P R LG G+P R
Sbjct: 242 GRRSRGHRRHRHPSSRWSLGAAGSPAR 268
>UniRef50_UPI0001554E06 Cluster: PREDICTED: hypothetical protein; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: hypothetical
protein - Ornithorhynchus anatinus
Length = 1149
Score = 31.9 bits (69), Expect = 8.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 329 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGV 481
FAV +G + GPG P + P+A R+Y P + G G+
Sbjct: 1097 FAVPSGSPSPTREPLVGPGSSPSEAEPHALSAFEEIRRKYVPNEGTGQWGL 1147
>UniRef50_Q6N6T9 Cluster: Cold shock DNA binding protein; n=38;
Alphaproteobacteria|Rep: Cold shock DNA binding protein
- Rhodopseudomonas palustris
Length = 235
Score = 31.9 bits (69), Expect = 8.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 171 KVSGTVKWFNVKSGYGFINRNDTKEDV 251
++SG +KWF+ GYGF+ ++ DV
Sbjct: 68 EISGVIKWFDASKGYGFVVPDNGWPDV 94
>UniRef50_Q5YVF2 Cluster: Putative cold shock protein; n=1; Nocardia
farcinica|Rep: Putative cold shock protein - Nocardia
farcinica
Length = 122
Score = 31.9 bits (69), Expect = 8.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
GTV WF+ + G+GFI +D VF
Sbjct: 54 GTVAWFDAEKGFGFITPDDRSPAVF 78
>UniRef50_Q48H64 Cluster: Cold shock domain protein CspD; n=7;
Proteobacteria|Rep: Cold shock domain protein CspD -
Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6)
Length = 94
Score = 31.9 bits (69), Expect = 8.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKED 248
++G VKWFN GYGFI ++ +D
Sbjct: 4 LNGKVKWFNNAKGYGFIIKDGKPDD 28
>UniRef50_Q0LHH2 Cluster: Putative uncharacterized protein; n=1;
Herpetosiphon aurantiacus ATCC 23779|Rep: Putative
uncharacterized protein - Herpetosiphon aurantiacus ATCC
23779
Length = 657
Score = 31.9 bits (69), Expect = 8.2
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -3
Query: 349 LPGNHGKLHRLSVADRA---HSLTWVVTGDGSLMQNTSSL 239
LP HG+L+ ++ + A HS++W V GDG+L T L
Sbjct: 582 LPNQHGQLYWMAPGEGATEDHSVSWDVIGDGALHTYTLDL 621
>UniRef50_Q0APJ7 Cluster: Cold-shock DNA-binding domain protein;
n=1; Maricaulis maris MCS10|Rep: Cold-shock DNA-binding
domain protein - Maricaulis maris (strain MCS10)
Length = 174
Score = 31.9 bits (69), Expect = 8.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 171 KVSGTVKWFNVKSGYGFINRNDTKEDV 251
++ G VKW++ GYGFI+ +D + D+
Sbjct: 15 ELEGRVKWYDPARGYGFIDASDGEGDI 41
>UniRef50_A4LXQ2 Cluster: Cold-shock DNA-binding domain protein;
n=1; Geobacter bemidjiensis Bem|Rep: Cold-shock
DNA-binding domain protein - Geobacter bemidjiensis Bem
Length = 92
Score = 31.9 bits (69), Expect = 8.2
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 168 EKV--SGTVKWFNVKSGYGFINRNDTKEDVF 254
EKV +G VKWFN G+GFI + D DVF
Sbjct: 24 EKVMANGVVKWFNDAKGFGFIEQ-DNGVDVF 53
>UniRef50_A4A3Y7 Cluster: Cold-shock domain family protein; n=1;
Congregibacter litoralis KT71|Rep: Cold-shock domain
family protein - Congregibacter litoralis KT71
Length = 189
Score = 31.9 bits (69), Expect = 8.2
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKE 245
GTVKWFN G+GFI R + E
Sbjct: 126 GTVKWFNGTKGFGFIIRENGDE 147
>UniRef50_A3UBK6 Cluster: Cold-shock DNA-binding domain protein;
n=8; Bacteroidetes|Rep: Cold-shock DNA-binding domain
protein - Croceibacter atlanticus HTCC2559
Length = 64
Score = 31.9 bits (69), Expect = 8.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFINRNDTKEDVF 254
+GTVK+FN G+GFI T E+ F
Sbjct: 3 TGTVKFFNDTKGFGFIKEEGTNEEHF 28
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 448,477,592
Number of Sequences: 1657284
Number of extensions: 7967358
Number of successful extensions: 29202
Number of sequences better than 10.0: 162
Number of HSP's better than 10.0 without gapping: 27577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29157
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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