Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1194X
         (498 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   1.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   8.1  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 254 LHQTAIARNNPRKAVRS 304
           +HQT I  NNPR   R+
Sbjct: 46  IHQTVIYHNNPRDPNRA 62


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 361 SSWCYWSRW*ASKRLTLCCRQAPWLPPA 444
           S+WC +S + ++ R  +  +  P+L PA
Sbjct: 145 STWCNYSAYSSASRHHVDHQPVPYLTPA 172


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 486 APTPPSPPR 460
           AP PP PPR
Sbjct: 730 APPPPPPPR 738


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 429 RSLSAA*GEPFTGSPPGPVTPAA 361
           +S ++  G   T S  GPV PAA
Sbjct: 121 QSATSGGGANLTNSLTGPVRPAA 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,222
Number of Sequences: 336
Number of extensions: 1821
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)