Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1194X
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0202 - 1638978-1639571 42 4e-04
02_01_0158 - 1103461-1104186 39 0.002
03_01_0483 + 3689155-3689814 31 0.39
04_03_0239 + 13205509-13206090 31 0.68
07_03_1624 + 28204892-28205024,28205160-28205242,28205305-282053... 30 1.2
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 1.2
02_03_0120 + 15463163-15465250 30 1.2
10_08_0512 + 18455454-18456121,18456214-18456318,18457493-184576... 29 1.6
01_02_0001 - 10057548-10057973 29 2.7
08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160 28 4.8
08_01_0229 + 1834102-1834358,1834442-1834901 28 4.8
04_04_1582 - 34590698-34591199,34593849-34594690 28 4.8
03_05_0433 - 24245560-24245946 28 4.8
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 28 4.8
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 27 8.4
10_08_0839 + 20940847-20941329 27 8.4
09_03_0034 + 11751965-11752010,11752138-11752205,11753142-117532... 27 8.4
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327... 27 8.4
08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496... 27 8.4
07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474 27 8.4
04_03_0870 + 20431215-20431419,20432559-20433439,20433829-204339... 27 8.4
03_05_0322 - 23094767-23094873,23094956-23095199,23095288-23095479 27 8.4
03_04_0171 + 18001993-18001995,18002527-18002640,18002958-180031... 27 8.4
>08_01_0202 - 1638978-1639571
Length = 197
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 165 AEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
+E+V GTVKWF+ G+GFI +D ED+F
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLF 32
Score = 34.3 bits (75), Expect = 0.055
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVKG 403
RS+ DG+ VEF+V +G G +A VT PGG + G
Sbjct: 44 RSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGALTG 79
>02_01_0158 - 1103461-1104186
Length = 241
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 165 AEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
A + GTVKWFN G+GFI+ +D ED+F
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSEDLF 33
Score = 37.5 bits (83), Expect = 0.006
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVKGSPYAADKLR 430
+HQ++I + RS+ +GE VEFA+ E G +A VTGP G VKG A
Sbjct: 34 VHQSSIKADG----FRSLAEGEQVEFAISESEDGRTKAVDVTGPDGSFVKG---GAGGGG 86
Query: 431 GYHRQYFPRQRGGLGGVG 484
G + R GG GG G
Sbjct: 87 GGGGGFGSRGGGGSGGGG 104
>03_01_0483 + 3689155-3689814
Length = 219
Score = 31.5 bits (68), Expect = 0.39
Identities = 25/62 (40%), Positives = 29/62 (46%)
Frame = +2
Query: 308 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVGA 487
GDG A AG G +AA G G +PV+GS +D RG P RG GG A
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARGDGGGADP-VRGSAGGSDA 118
Query: 488 PR 493
R
Sbjct: 119 AR 120
Score = 31.5 bits (68), Expect = 0.39
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = +2
Query: 308 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVGA 487
GDG + V G +AA G G +PV+GS +D RG P RGG GG A
Sbjct: 81 GDGGGAD-PVRGSAGGSDAARGDGGGADPVRGSAGGSDAARGDGGGADP-VRGGAGGSDA 138
>04_03_0239 + 13205509-13206090
Length = 193
Score = 30.7 bits (66), Expect = 0.68
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +2
Query: 308 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVGA 487
G G A +F G AA G G +PV+G AD++RG +R G GG A
Sbjct: 46 GSGGADQFR--GGGDDVVAARCDGGGADPVRGGSGGADQVRGGGDDVVAARRDG-GGADA 102
Query: 488 PR 493
R
Sbjct: 103 AR 104
>07_03_1624 + 28204892-28205024,28205160-28205242,28205305-28205376,
28205889-28205946,28206554-28206603,28207805-28207873,
28208183-28208317,28208410-28208581,28208663-28208754,
28208837-28209244,28209783-28210704,28211592-28211831,
28211898-28212229,28212460-28212608,28213265-28213841,
28214078-28214224,28214693-28214968,28215296-28215403,
28215634-28215839,28216079-28216217,28216329-28216982,
28218040-28218099,28218234-28218388,28218414-28218636,
28218729-28218773
Length = 1834
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 314 GEAVEFAVVAGEKGFEAAG-VTGPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVGA 487
GE V + V+ GE G V P G GSPY + L +Q P + G VGA
Sbjct: 1518 GERVPYVVIHGEPGARLVDMVIDPYGLLEVGSPYRLNALYYITKQIIPALQRVFGLVGA 1576
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 314 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 403
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>02_03_0120 + 15463163-15465250
Length = 695
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 242 GRCVLHQTAIARNNPRKAVRSVGDGEAVEFAVVA--GEKGFEAAGVTGPGG 388
G VL ++ R N AV S GEA VA KGF++ V G GG
Sbjct: 349 GSAVLLGRSVRRKNQEHAVASEDMGEATLSMEVARAATKGFDSGNVIGVGG 399
>10_08_0512 +
18455454-18456121,18456214-18456318,18457493-18457615,
18457732-18457902,18458076-18458205,18458458-18458670,
18458757-18458866,18459144-18459186
Length = 520
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 494 CVELLHRLV--RHVDEGNIAGGSHGACLQHKV 405
CVE +HR++ +V+ GN+ HGA QH V
Sbjct: 252 CVEGIHRMLVYEYVNNGNLEQWLHGAMRQHGV 283
>01_02_0001 - 10057548-10057973
Length = 141
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 308 GDGEAVEFAVVAGEKGFEAAGVTG-PGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVG 484
G G A AV+ G G A TG GG+ +GS + L + ++ +GG GG G
Sbjct: 30 GKGAADPAAVLVGRAGSGACLPTGGDGGDAREGSRRCSGGLPPHRWRFSESAQGGGGGTG 89
>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
Length = 749
Score = 27.9 bits (59), Expect = 4.8
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = +2
Query: 227 QE*HQGRCVL--HQTAIARNNPRKAVRSVGDGEA----VEFAVVAGEKGFEAAGVTGPGG 388
Q+ H G +L HQ + P+ S DG A +E + G E+ G G GG
Sbjct: 17 QQHHNGHHLLDQHQQHQHQLPPQATTTSESDGRAPRDELEMSKSGGSDNLESGGGGGGGG 76
Query: 389 EPVKGSPYAADKLRGYHR 442
P + + YHR
Sbjct: 77 SGGDQDPNQRPRKKRYHR 94
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 4.8
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 62 GVIGERRWWQRW 27
GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 308 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLR 430
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>03_05_0433 - 24245560-24245946
Length = 128
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 331 KLHRLSVADRAHSLTWVVTGDGSLMQNTSSLVSFLL 224
++ RLS+ A + W +TGDGS +S+ F +
Sbjct: 55 EVQRLSLTSEADRIKWKLTGDGSFPAVSSAYELFFM 90
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +2
Query: 296 VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 409
VR G G A FAV G A G GGEP SP
Sbjct: 53 VRGGGGGGAALFAVPRLFVGLAAKRGAGDGGEPASRSP 90
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 397 YWLTTGTSNTSCFKAFLPGNHGKLHRLSVADRAHS 293
+ + +NTS LPG+ GKLHRL + D ++
Sbjct: 102 FLIVLNLANTS-LTGTLPGDIGKLHRLELLDLGYN 135
>10_08_0839 + 20940847-20941329
Length = 160
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 284 PRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRGYH 439
P AVR +AV + V+ + G A GPGG G+ AA + G H
Sbjct: 96 PISAVRLEQMSKAVRWLVIELQHGAGGASAAGPGGG--GGAAAAASGVAGQH 145
>09_03_0034 +
11751965-11752010,11752138-11752205,11753142-11753252,
11753626-11753712,11753800-11754008,11754653-11754926,
11756595-11757079,11758367-11758484,11758584-11758700,
11758779-11758925,11759061-11759135,11759198-11759266,
11759914-11760024,11760183-11760267,11760404-11760501,
11760628-11760720,11760806-11760880
Length = 755
Score = 27.1 bits (57), Expect = 8.4
Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Frame = +2
Query: 215 WFHQQE*HQGRCVLHQTAIAR--NNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGG 388
W H Q + RC A A P A+ S G+G V GE+ V G G
Sbjct: 348 WLHAQGDLRARCFFSARAAAPLPECPALAIASAGNGNGNGAGGVGGEQRQRPVSVAGVGS 407
Query: 389 EP-VKGS-PYAADKLRGYHRQYFPRQRGGLGGVGAPR 493
+G+ P++ R R + PR + GA R
Sbjct: 408 AVFFRGTEPFSLRDWRAIKR-FLPRDCPLIRAYGAIR 443
>09_02_0515 +
10121849-10122149,10132151-10132187,10132314-10132790,
10133184-10133733
Length = 454
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKE 245
V+ VKW +KSG F N KE
Sbjct: 195 VAAAVKWLKIKSGQAFAVENYVKE 218
>08_02_0503 -
17848739-17849004,17849109-17849268,17849368-17849691,
17849787-17850209
Length = 390
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 251 VLHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 403
VL + A A NP A R G +A + + + G++ AGV G VKG
Sbjct: 112 VLVRVAAAALNPVDAKRRAGKFKATD-SPLPTVPGYDVAGVVVKAGRKVKG 161
>07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474
Length = 223
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 263 TAIARNNPRKAVRSVGDGEAVEFAVVAG 346
TAI N AV +VGD AV F V AG
Sbjct: 68 TAILINGETLAVANVGDSRAVAFDVRAG 95
>04_03_0870 +
20431215-20431419,20432559-20433439,20433829-20433990,
20434742-20435001,20435110-20435200,20435487-20435675
Length = 595
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 350 KGFEAAGVTGPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVGAP 490
+G +A G GP G V S +K + R + P RG GG G P
Sbjct: 449 RGADARGGVGPFGLWVLASAGLEEKTAVFFRVFRPAARG--GGAGKP 493
>03_05_0322 - 23094767-23094873,23094956-23095199,23095288-23095479
Length = 180
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 239 QGRCVLHQTAIARNNPRKAVRSVGDGEAV 325
+GRCV + +ARN + + VG+ EAV
Sbjct: 109 EGRCVQSELVLARNELATSRKVVGEKEAV 137
>03_04_0171 +
18001993-18001995,18002527-18002640,18002958-18003127,
18003408-18003684
Length = 187
Score = 27.1 bits (57), Expect = 8.4
Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = +2
Query: 245 RCVLHQTAIARNNPRKAVRSVGDGEAVEF---AV-VAGEKGFEAAGVTGPGG--EPVKGS 406
R LH R+AV S G G+AVE AV V E EA V GG E V+
Sbjct: 28 RFTLHGVGTKMKRRRRAVESGGGGDAVEAGGGAVEVEAEAEAEAEAVEAGGGAVEAVRRR 87
Query: 407 PYA 415
P A
Sbjct: 88 PSA 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,820,276
Number of Sequences: 37544
Number of extensions: 247015
Number of successful extensions: 1174
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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