Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1194X
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)                   34   0.075
SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.92 
SB_26212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   27   6.5  
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 27   6.5  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    27   6.5  
SB_3634| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.5  
SB_48061| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +2

Query: 350 KGFEAAGVTGPGGEPVKGSPYAADKLRGYHR-QYFPRQR 463
           +G EA+ VTGP GEPV+GS YA D+ R  +R  Y   +R
Sbjct: 13  QGLEASNVTGPDGEPVQGSKYAPDRRRRNNRYDYLSNRR 51


>SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)
          Length = 80

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +3

Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
           ++ + +GTVKWFN + GYGFI    + +D+F
Sbjct: 12  MSNRQNGTVKWFNDEKGYGFIT-PQSGDDLF 41


>SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 272 ARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGG-EPVKGSPYAADKLRGYHRQY 448
           AR    +AVR    GE    +V  G  G    G  G GG E V+G+PY  ++  G   Q 
Sbjct: 395 AREYLARAVREGLRGEEGSPSVFLGGGGRGGGGGDGGGGGEGVQGTPYTPEEEEGRALQA 454

Query: 449 FPRQRGG 469
             R  GG
Sbjct: 455 CGRGGGG 461


>SB_26212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 391 ASKRLTLCCRQAPWLPP 441
           AS   T+C RQAPWL P
Sbjct: 19  ASPTWTICLRQAPWLSP 35


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +2

Query: 257  HQTAIARNNPRKAVRSVGDGEAVEFAV--VAGEKGFEAA--GVTGPGGEPVKGSPYAADK 424
            +Q  IA    R AV   G    V F     +  KG + A  GVT PGG+ + GS      
Sbjct: 837  YQFQIAEGMTRVAVAVFGASTKVIFGFDEFSQVKGMDNALSGVTRPGGDAMVGS-----A 891

Query: 425  LRGYHRQYFPRQRGGL 472
            LR   +Q F + R G+
Sbjct: 892  LRDAKKQIFNKARDGV 907


>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 1640

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 236  HQGRCVLHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGE 391
            H+ R   H T+   +  RKA+  V   +  E  V +   G  AAG  GPG E
Sbjct: 1324 HEPRTARHPTSPWTSRSRKALGKVEQNQQSEERVASCRCGAAAAG--GPGAE 1373


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 249  VFCIRLPSPVTTHVRLCARSATERRWSLPWLPGRK 353
            +F I + S   T ++ C  +   RRW   W  GRK
Sbjct: 2218 IFIITIVSSTPTFLKACDINRYRRRWYPVWRRGRK 2252


>SB_3634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 389 EPVKGSPYAADKLRGYHRQYFPRQ 460
           +PV+G+PY  DK   Y+++   RQ
Sbjct: 145 QPVRGAPYKVDKFTVYNKKRTQRQ 168


>SB_48061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -1

Query: 498 HLRGAPTPPSPPR*RGKYCRW*PRSLSAA*GEPFTGSPPGP 376
           HL+  P PP+ P    +      RS      EPF   PPGP
Sbjct: 182 HLQYGPPPPTSPGLCNQGYNLHQRSQPVHSMEPFPDQPPGP 222


>SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 784

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 334 GKLHRLSVADRAHSLTWVVTGDGSLMQ 254
           G++ RL+VA    SL W  + DG++ Q
Sbjct: 101 GRVKRLAVAPNMPSLVWSASEDGTIRQ 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,919,280
Number of Sequences: 59808
Number of extensions: 243050
Number of successful extensions: 740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)