Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1194X
         (498 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.          24   2.5  
AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.          24   2.5  
AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.          24   2.5  
AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.          24   2.5  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    24   3.3  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   3.3  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   4.4  
AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA methy...    23   4.4  
AF000953-1|AAB96576.1|  433|Anopheles gambiae carboxypeptidase A...    23   5.8  

>AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 302 SVGDGEAVEFAVVAGEKGFEAAGVTGPGG 388
           ++GD E    AV   ++GF A+G  G GG
Sbjct: 201 TIGD-EQQSHAVSPNQRGFSASGGGGSGG 228


>AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 302 SVGDGEAVEFAVVAGEKGFEAAGVTGPGG 388
           ++GD E    AV   ++GF A+G  G GG
Sbjct: 201 TIGD-EQQSHAVSPNQRGFSASGGGGSGG 228


>AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 302 SVGDGEAVEFAVVAGEKGFEAAGVTGPGG 388
           ++GD E    AV   ++GF A+G  G GG
Sbjct: 201 TIGD-EQQSHAVSPNQRGFSASGGGGSGG 228


>AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 302 SVGDGEAVEFAVVAGEKGFEAAGVTGPGG 388
           ++GD E    AV   ++GF A+G  G GG
Sbjct: 201 TIGD-EQQSHAVSPNQRGFSASGGGGSGG 228


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 486 APTPPSPPR*RGKYCRW*PRSLSAA*G 406
           AP+PP+PP   G   R+   S S   G
Sbjct: 74  APSPPTPPTRNGTIFRYRSNSASCTGG 100


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 489 GAPTPPSPPR*RGKY 445
           G PT P PPR  G Y
Sbjct: 204 GTPTQPQPPRPGGMY 218


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 344 GEKGFEAAGVTGPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGV 481
           GE G    G  GP GEP + +    D+L+        +   GL G+
Sbjct: 634 GEPGL--LGPPGPSGEPGRDAEIPMDQLKPIKGDKGEKGENGLMGI 677



 Score = 22.6 bits (46), Expect = 7.6
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +2

Query: 344 GEKGFEAAGVTGPGGEPVKGSPY--AADKLRGYHRQ--Y-FPRQRGGLGGVGAP 490
           G+KG E+  V  PG +  +G P     + LRG   Q  Y  P Q+G  G  G P
Sbjct: 465 GDKG-ESGSVGMPGPQGPRGYPGQPGPEGLRGEPGQPGYGIPGQKGNAGMAGFP 517


>AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA
           methylase protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 296 QPYVGCYGRWQSDAKHIFLGVI 231
           QPY   +GRW +D K   +  I
Sbjct: 167 QPYDVLFGRWVADGKRDMINEI 188


>AF000953-1|AAB96576.1|  433|Anopheles gambiae carboxypeptidase A
           protein.
          Length = 433

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 400 FYWLTTGTSNTSC 362
           F+W   GTSN +C
Sbjct: 264 FHWAEQGTSNNAC 276


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 457,907
Number of Sequences: 2352
Number of extensions: 8226
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44400195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)