Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1194X
(498 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M85234-1|AAA36569.1| 322|Homo sapiens nuclease sensitive elemen... 101 2e-21
M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein. 101 2e-21
M24070-1|AAA35750.1| 364|Homo sapiens protein ( Human DNA-bindi... 101 2e-21
L28809-1|AAA20871.1| 324|Homo sapiens protein ( Homo sapiens db... 101 2e-21
BC106045-1|AAI06046.1| 324|Homo sapiens Y box binding protein 1... 101 2e-21
BC098435-1|AAH98435.1| 324|Homo sapiens Y box binding protein 1... 101 2e-21
BC090038-1|AAH90038.1| 324|Homo sapiens Y box binding protein 1... 101 2e-21
BC072014-1|AAH72014.1| 266|Homo sapiens YBX1 protein protein. 101 2e-21
BC071708-1|AAH71708.1| 324|Homo sapiens Y box binding protein 1... 101 2e-21
BC070084-1|AAH70084.1| 324|Homo sapiens Y box binding protein 1... 101 2e-21
BC065571-1|AAH65571.1| 324|Homo sapiens Y box binding protein 1... 101 2e-21
BC038384-1|AAH38384.1| 324|Homo sapiens Y box binding protein 1... 101 2e-21
BC018393-1|AAH18393.1| 267|Homo sapiens Unknown (protein for IM... 101 2e-21
BC015208-1|AAH15208.1| 324|Homo sapiens Y box binding protein 1... 101 2e-21
BC010430-1|AAH10430.1| 324|Homo sapiens Y box binding protein 1... 101 2e-21
BC002411-1|AAH02411.1| 324|Homo sapiens Y box binding protein 1... 101 2e-21
BC000064-1|AAH00064.1| 266|Homo sapiens YBX1 protein protein. 101 2e-21
X95325-1|CAA64631.1| 372|Homo sapiens DNA-binding protein protein. 100 2e-21
X72712-1|CAA51261.1| 372|Homo sapiens cold shock domain protein... 100 2e-21
M24069-1|AAA35749.1| 412|Homo sapiens protein ( Human DNA-bindi... 100 2e-21
L29071-1|AAA79243.1| 342|Homo sapiens DNA-binding protein A pro... 100 2e-21
J03827-1|AAA61308.1| 317|Homo sapiens NFYA protein. 100 2e-21
BC021926-1|AAH21926.1| 372|Homo sapiens cold shock domain prote... 100 2e-21
BC015913-1|AAH15913.1| 303|Homo sapiens CSDA protein protein. 100 2e-21
BC015564-1|AAH15564.1| 372|Homo sapiens cold shock domain prote... 100 2e-21
BC008801-1|AAH08801.1| 372|Homo sapiens cold shock domain prote... 100 2e-21
AB209896-1|BAD93133.1| 134|Homo sapiens CSDA protein variant pr... 100 2e-21
BC009744-1|AAH09744.1| 303|Homo sapiens CSDA protein protein. 100 6e-21
DQ120685-1|ABB92460.1| 319|Homo sapiens rcNSEP1 protein. 94 2e-19
BC047760-1|AAH47760.1| 364|Homo sapiens Y box binding protein 2... 93 5e-19
BC033800-1|AAH33800.1| 364|Homo sapiens Y box binding protein 2... 93 5e-19
AF096834-1|AAD30662.1| 364|Homo sapiens germ cell specific Y-bo... 93 5e-19
AB208818-1|BAD92055.1| 268|Homo sapiens germ cell specific Y-bo... 90 5e-18
Z95329-1|CAI21661.2| 250|Homo sapiens lin-28 homolog B (C. eleg... 42 0.002
DQ127228-1|AAZ38897.1| 250|Homo sapiens LIN28B protein. 42 0.002
BC150538-1|AAI50539.1| 227|Homo sapiens Unknown (protein for IM... 42 0.002
BC150537-1|AAI50538.1| 227|Homo sapiens Unknown (protein for IM... 42 0.002
BC141960-1|AAI41961.1| 227|Homo sapiens LIN28B protein protein. 42 0.002
BC127713-1|AAI27714.1| 227|Homo sapiens LIN28B protein protein. 42 0.002
BC127712-1|AAI27713.1| 227|Homo sapiens LIN28B protein protein. 42 0.002
AL135911-2|CAI20969.2| 250|Homo sapiens lin-28 homolog B (C. el... 42 0.002
AK131411-1|BAD18558.1| 250|Homo sapiens protein ( Homo sapiens ... 42 0.002
BC028566-1|AAH28566.1| 209|Homo sapiens LIN28 protein protein. 38 0.026
AL513365-12|CAI21500.1| 209|Homo sapiens lin-28 homolog (C. ele... 38 0.026
AK022519-1|BAB14075.1| 209|Homo sapiens protein ( Homo sapiens ... 38 0.026
AF521099-1|AAM77751.1| 209|Homo sapiens RNA-binding protein LIN... 38 0.026
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 32 1.3
Y16346-1|CAA76180.1| 77|Homo sapiens COL1A1 and PDGFB fusion t... 32 1.3
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 32 1.3
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein. 32 1.3
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 32 1.3
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 32 1.3
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 32 1.3
BC015625-1|AAH15625.1| 477|Homo sapiens tyrosyl-tRNA synthetase... 31 1.7
AK024057-1|BAB14806.1| 477|Homo sapiens protein ( Homo sapiens ... 31 1.7
AJ715957-1|CAG29711.1| 110|Homo sapiens immunoglobulin heavy ch... 29 6.8
>M85234-1|AAA36569.1| 322|Homo sapiens nuclease sensitive element
binding protein-1 protein.
Length = 322
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 85 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 142
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 143 HYRRY-PRRRG 152
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 53 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 84
>M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein.
Length = 320
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 83 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 140
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 141 HYRRY-PRRRG 150
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 51 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 82
>M24070-1|AAA35750.1| 364|Homo sapiens protein ( Human DNA-binding
protein B (dbpB) gene, 3' end. ).
Length = 364
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 126 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 183
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 184 HYRRY-PRRRG 193
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 94 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 125
>L28809-1|AAA20871.1| 324|Homo sapiens protein ( Homo sapiens
dbpB-like protein mRNA, complete cds. ).
Length = 324
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>BC106045-1|AAI06046.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>BC098435-1|AAH98435.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>BC090038-1|AAH90038.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>BC072014-1|AAH72014.1| 266|Homo sapiens YBX1 protein protein.
Length = 266
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>BC071708-1|AAH71708.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>BC070084-1|AAH70084.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>BC065571-1|AAH65571.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>BC038384-1|AAH38384.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>BC018393-1|AAH18393.1| 267|Homo sapiens Unknown (protein for
IMAGE:3882730) protein.
Length = 267
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>BC015208-1|AAH15208.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>BC010430-1|AAH10430.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>BC002411-1|AAH02411.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>BC000064-1|AAH00064.1| 266|Homo sapiens YBX1 protein protein.
Length = 266
Score = 101 bits (241), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>X95325-1|CAA64631.1| 372|Homo sapiens DNA-binding protein protein.
Length = 372
Score = 100 bits (240), Expect = 2e-21
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADR-RR 176
Query: 434 YHRQYFPRQRG 466
Y R Y+ R+RG
Sbjct: 177 YRRGYYGRRRG 187
Score = 64.1 bits (149), Expect = 3e-10
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVF 117
>X72712-1|CAA51261.1| 372|Homo sapiens cold shock domain protein A
protein.
Length = 372
Score = 100 bits (240), Expect = 2e-21
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADR-RR 176
Query: 434 YHRQYFPRQRG 466
Y R Y+ R+RG
Sbjct: 177 YRRGYYGRRRG 187
Score = 64.1 bits (149), Expect = 3e-10
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVF 117
>M24069-1|AAA35749.1| 412|Homo sapiens protein ( Human DNA-binding
protein A (dbpA) gene, 3' end. ).
Length = 412
Score = 100 bits (240), Expect = 2e-21
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 188 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADR-RR 246
Query: 434 YHRQYFPRQRG 466
Y R Y+ R+RG
Sbjct: 247 YRRGYYGRRRG 257
Score = 64.1 bits (149), Expect = 3e-10
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 156 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVF 187
>L29071-1|AAA79243.1| 342|Homo sapiens DNA-binding protein A
protein.
Length = 342
Score = 100 bits (240), Expect = 2e-21
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADR-RR 176
Query: 434 YHRQYFPRQRG 466
Y R Y+ R+RG
Sbjct: 177 YRRGYYGRRRG 187
Score = 64.1 bits (149), Expect = 3e-10
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVF 117
>J03827-1|AAA61308.1| 317|Homo sapiens NFYA protein.
Length = 317
Score = 100 bits (240), Expect = 2e-21
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGEEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 434 YHRQYFPRQRG 466
++R+Y PR+RG
Sbjct: 144 HYRRY-PRRRG 153
Score = 64.9 bits (151), Expect = 1e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVF 85
>BC021926-1|AAH21926.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 100 bits (240), Expect = 2e-21
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADR-RR 176
Query: 434 YHRQYFPRQRG 466
Y R Y+ R+RG
Sbjct: 177 YRRGYYGRRRG 187
Score = 64.1 bits (149), Expect = 3e-10
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVF 117
>BC015913-1|AAH15913.1| 303|Homo sapiens CSDA protein protein.
Length = 303
Score = 100 bits (240), Expect = 2e-21
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADR-RR 176
Query: 434 YHRQYFPRQRG 466
Y R Y+ R+RG
Sbjct: 177 YRRGYYGRRRG 187
Score = 64.1 bits (149), Expect = 3e-10
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVF 117
>BC015564-1|AAH15564.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 100 bits (240), Expect = 2e-21
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADR-RR 176
Query: 434 YHRQYFPRQRG 466
Y R Y+ R+RG
Sbjct: 177 YRRGYYGRRRG 187
Score = 64.1 bits (149), Expect = 3e-10
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVF 117
>BC008801-1|AAH08801.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 100 bits (240), Expect = 2e-21
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADR-RR 176
Query: 434 YHRQYFPRQRG 466
Y R Y+ R+RG
Sbjct: 177 YRRGYYGRRRG 187
Score = 64.1 bits (149), Expect = 3e-10
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVF 117
>AB209896-1|BAD93133.1| 134|Homo sapiens CSDA protein variant
protein.
Length = 134
Score = 100 bits (240), Expect = 2e-21
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 51 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADR-RR 109
Query: 434 YHRQYFPRQRG 466
Y R Y+ R+RG
Sbjct: 110 YRRGYYGRRRG 120
Score = 64.1 bits (149), Expect = 3e-10
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 19 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVF 50
>BC009744-1|AAH09744.1| 303|Homo sapiens CSDA protein protein.
Length = 303
Score = 99.5 bits (237), Expect = 6e-21
Identities = 48/71 (67%), Positives = 56/71 (78%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI +NNPRK +RS+GDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSLGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADR-RR 176
Query: 434 YHRQYFPRQRG 466
Y R Y+ R+RG
Sbjct: 177 YRRGYYGRRRG 187
Score = 64.1 bits (149), Expect = 3e-10
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A KV GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVF 117
>DQ120685-1|ABB92460.1| 319|Homo sapiens rcNSEP1 protein.
Length = 319
Score = 94.3 bits (224), Expect = 2e-19
Identities = 47/71 (66%), Positives = 55/71 (77%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+H TA +NNPRK +RSVGDGE VEF VV GEKG +AA VTGPGG PV+GS YAAD R
Sbjct: 82 VHHTAXKKNNPRKYLRSVGDGEXVEFDVVEGEKGAKAANVTGPGGVPVQGSKYAAD--RN 139
Query: 434 YHRQYFPRQRG 466
++R+Y PR RG
Sbjct: 140 HYRRY-PRPRG 149
Score = 62.9 bits (146), Expect = 6e-10
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV GTVKWFNV++GYGFI+RNDTKEDVF
Sbjct: 50 VIATKVLGTVKWFNVRNGYGFIHRNDTKEDVF 81
>BC047760-1|AAH47760.1| 364|Homo sapiens Y box binding protein 2
protein.
Length = 364
Score = 93.1 bits (221), Expect = 5e-19
Identities = 45/68 (66%), Positives = 52/68 (76%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA ++ +
Sbjct: 121 VHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS 180
Query: 434 YHRQYFPR 457
R++ PR
Sbjct: 181 --RRFIPR 186
Score = 61.7 bits (143), Expect = 1e-09
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A +V GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINRNDTKEDVF 120
>BC033800-1|AAH33800.1| 364|Homo sapiens Y box binding protein 2
protein.
Length = 364
Score = 93.1 bits (221), Expect = 5e-19
Identities = 45/68 (66%), Positives = 52/68 (76%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA ++ +
Sbjct: 121 VHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS 180
Query: 434 YHRQYFPR 457
R++ PR
Sbjct: 181 --RRFIPR 186
Score = 61.7 bits (143), Expect = 1e-09
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A +V GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINRNDTKEDVF 120
>AF096834-1|AAD30662.1| 364|Homo sapiens germ cell specific Y-box
binding protein protein.
Length = 364
Score = 93.1 bits (221), Expect = 5e-19
Identities = 45/68 (66%), Positives = 52/68 (76%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA ++ +
Sbjct: 121 VHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS 180
Query: 434 YHRQYFPR 457
R++ PR
Sbjct: 181 --RRFIPR 186
Score = 61.7 bits (143), Expect = 1e-09
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+A +V GTVKWFNV++GYGFINRNDTKEDVF
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINRNDTKEDVF 120
>AB208818-1|BAD92055.1| 268|Homo sapiens germ cell specific Y-box
binding protein variant protein.
Length = 268
Score = 89.8 bits (213), Expect = 5e-18
Identities = 44/67 (65%), Positives = 51/67 (76%)
Frame = +2
Query: 257 HQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRGY 436
+QTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA ++ +
Sbjct: 26 NQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS- 84
Query: 437 HRQYFPR 457
R++ PR
Sbjct: 85 -RRFIPR 90
>Z95329-1|CAI21661.2| 250|Homo sapiens lin-28 homolog B (C.
elegans) protein.
Length = 250
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 406
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 75 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
Score = 29.5 bits (63), Expect = 6.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFIN 227
+G KWFNV+ G+GFI+
Sbjct: 31 TGHCKWFNVRMGFGFIS 47
>DQ127228-1|AAZ38897.1| 250|Homo sapiens LIN28B protein.
Length = 250
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 406
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 75 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
Score = 29.5 bits (63), Expect = 6.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFIN 227
+G KWFNV+ G+GFI+
Sbjct: 31 TGHCKWFNVRMGFGFIS 47
>BC150538-1|AAI50539.1| 227|Homo sapiens Unknown (protein for
IMAGE:40127315) protein.
Length = 227
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 406
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 52 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
Score = 29.5 bits (63), Expect = 6.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFIN 227
+G KWFNV+ G+GFI+
Sbjct: 8 TGHCKWFNVRMGFGFIS 24
>BC150537-1|AAI50538.1| 227|Homo sapiens Unknown (protein for
IMAGE:40127314) protein.
Length = 227
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 406
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 52 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
Score = 29.5 bits (63), Expect = 6.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFIN 227
+G KWFNV+ G+GFI+
Sbjct: 8 TGHCKWFNVRMGFGFIS 24
>BC141960-1|AAI41961.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 406
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 52 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
Score = 29.5 bits (63), Expect = 6.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFIN 227
+G KWFNV+ G+GFI+
Sbjct: 8 TGHCKWFNVRMGFGFIS 24
>BC127713-1|AAI27714.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 406
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 52 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
Score = 29.5 bits (63), Expect = 6.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFIN 227
+G KWFNV+ G+GFI+
Sbjct: 8 TGHCKWFNVRMGFGFIS 24
>BC127712-1|AAI27713.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 406
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 52 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
Score = 29.5 bits (63), Expect = 6.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFIN 227
+G KWFNV+ G+GFI+
Sbjct: 8 TGHCKWFNVRMGFGFIS 24
>AL135911-2|CAI20969.2| 250|Homo sapiens lin-28 homolog B (C.
elegans) protein.
Length = 250
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 406
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 75 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
Score = 29.5 bits (63), Expect = 6.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFIN 227
+G KWFNV+ G+GFI+
Sbjct: 31 TGHCKWFNVRMGFGFIS 47
>AK131411-1|BAD18558.1| 250|Homo sapiens protein ( Homo sapiens
cDNA FLJ16517 fis, clone NT2RI3007167. ).
Length = 250
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 406
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 75 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
Score = 29.5 bits (63), Expect = 6.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFIN 227
+G KWFNV+ G+GFI+
Sbjct: 31 TGHCKWFNVRMGFGFIS 47
>BC028566-1|AAH28566.1| 209|Homo sapiens LIN28 protein protein.
Length = 209
Score = 37.5 bits (83), Expect = 0.026
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGG 388
RS+ +GEAVEF KG E+ VTGPGG
Sbjct: 85 RSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
Score = 29.1 bits (62), Expect = 9.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFIN 227
+G KWFNV+ G+GF++
Sbjct: 41 AGICKWFNVRMGFGFLS 57
>AL513365-12|CAI21500.1| 209|Homo sapiens lin-28 homolog (C.
elegans) protein.
Length = 209
Score = 37.5 bits (83), Expect = 0.026
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGG 388
RS+ +GEAVEF KG E+ VTGPGG
Sbjct: 85 RSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
Score = 29.1 bits (62), Expect = 9.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFIN 227
+G KWFNV+ G+GF++
Sbjct: 41 AGICKWFNVRMGFGFLS 57
>AK022519-1|BAB14075.1| 209|Homo sapiens protein ( Homo sapiens
cDNA FLJ12457 fis, clone NT2RM1000666, weakly similar to
DNA-BINDING PROTEIN A. ).
Length = 209
Score = 37.5 bits (83), Expect = 0.026
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGG 388
RS+ +GEAVEF KG E+ VTGPGG
Sbjct: 85 RSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
Score = 29.1 bits (62), Expect = 9.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFIN 227
+G KWFNV+ G+GF++
Sbjct: 41 AGICKWFNVRMGFGFLS 57
>AF521099-1|AAM77751.1| 209|Homo sapiens RNA-binding protein LIN-28
protein.
Length = 209
Score = 37.5 bits (83), Expect = 0.026
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +2
Query: 299 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGG 388
RS+ +GEAVEF KG E+ VTGPGG
Sbjct: 85 RSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
Score = 29.1 bits (62), Expect = 9.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 177 SGTVKWFNVKSGYGFIN 227
+G KWFNV+ G+GF++
Sbjct: 41 AGICKWFNVRMGFGFLS 57
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 31.9 bits (69), Expect = 1.3
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = -1
Query: 489 GAPTPPSPPR*RGKYCRW*PRSLSAA*GEPFTGSPPGPVTPAASK 355
G PP PP GK PR + G P PPGP PA K
Sbjct: 890 GNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEK 934
Score = 29.5 bits (63), Expect = 6.8
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 344 GEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
GE+GF G+ GP GEP K P A RG
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERG 995
>Y16346-1|CAA76180.1| 77|Homo sapiens COL1A1 and PDGFB fusion
transcript protein.
Length = 77
Score = 31.9 bits (69), Expect = 1.3
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = -1
Query: 489 GAPTPPSPPR*RGKYCRW*PRSLSAA*GEPFTGSPPGPVTPAASK 355
G PP PP GK PR + G P PPGP PA K
Sbjct: 10 GNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEK 54
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 31.9 bits (69), Expect = 1.3
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = -1
Query: 489 GAPTPPSPPR*RGKYCRW*PRSLSAA*GEPFTGSPPGPVTPAASK 355
G PP PP GK PR + G P PPGP PA K
Sbjct: 890 GNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEK 934
Score = 29.5 bits (63), Expect = 6.8
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 344 GEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
GE+GF G+ GP GEP K P A RG
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERG 995
>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
Length = 1040
Score = 31.9 bits (69), Expect = 1.3
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = -1
Query: 489 GAPTPPSPPR*RGKYCRW*PRSLSAA*GEPFTGSPPGPVTPAASK 355
G PP PP GK PR + G P PPGP PA K
Sbjct: 466 GNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEK 510
Score = 29.5 bits (63), Expect = 6.8
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 344 GEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
GE+GF G+ GP GEP K P A RG
Sbjct: 544 GERGFP--GLPGPSGEPGKQGPSGASGERG 571
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 31.9 bits (69), Expect = 1.3
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = -1
Query: 489 GAPTPPSPPR*RGKYCRW*PRSLSAA*GEPFTGSPPGPVTPAASK 355
G PP PP GK PR + G P PPGP PA K
Sbjct: 890 GNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEK 934
Score = 29.5 bits (63), Expect = 6.8
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 344 GEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
GE+GF G+ GP GEP K P A RG
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERG 995
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 31.9 bits (69), Expect = 1.3
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = -1
Query: 489 GAPTPPSPPR*RGKYCRW*PRSLSAA*GEPFTGSPPGPVTPAASK 355
G PP PP GK PR + G P PPGP PA K
Sbjct: 887 GNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEK 931
Score = 29.5 bits (63), Expect = 6.8
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 344 GEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
GE+GF G+ GP GEP K P A RG
Sbjct: 965 GERGFP--GLPGPSGEPGKQGPSGASGERG 992
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 31.9 bits (69), Expect = 1.3
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = -1
Query: 489 GAPTPPSPPR*RGKYCRW*PRSLSAA*GEPFTGSPPGPVTPAASK 355
G PP PP GK PR + G P PPGP PA K
Sbjct: 893 GNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEK 937
Score = 29.5 bits (63), Expect = 6.8
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 344 GEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
GE+GF G+ GP GEP K P A RG
Sbjct: 971 GERGFP--GLPGPSGEPGKQGPSGASGERG 998
>BC015625-1|AAH15625.1| 477|Homo sapiens tyrosyl-tRNA synthetase 2,
mitochondrial protein.
Length = 477
Score = 31.5 bits (68), Expect = 1.7
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 171 KVSGTVKWFNVKSGYGFINRNDTKEDVFCIRLPSPVTTHVRLCARSATERRW 326
++ G+ + N+ SGY FIN+ T EDVF I +P +T +SA W
Sbjct: 241 QLGGSDQLGNIMSGYEFINKL-TGEDVFGITVPLITSTTGAKLGKSAGNAVW 291
>AK024057-1|BAB14806.1| 477|Homo sapiens protein ( Homo sapiens
cDNA FLJ13995 fis, clone Y79AA1002209, weakly similar to
TYROSYL-TRNA SYNTHETASE (EC 6.1.1.1). ).
Length = 477
Score = 31.5 bits (68), Expect = 1.7
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 171 KVSGTVKWFNVKSGYGFINRNDTKEDVFCIRLPSPVTTHVRLCARSATERRW 326
++ G+ + N+ SGY FIN+ T EDVF I +P +T +SA W
Sbjct: 241 QLGGSDQLGNIMSGYEFINKL-TGEDVFGITVPLITSTTGAKLGKSAGNAVW 291
>AJ715957-1|CAG29711.1| 110|Homo sapiens immunoglobulin heavy chain
protein.
Length = 110
Score = 29.5 bits (63), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 234 DTKEDVFCIRLPSPVT--THVRLCARSATERRWSLPW 338
DT ++ F ++L S T V CAR E RW PW
Sbjct: 74 DTSKNQFSLKLTSVTAADTAVYFCAREQPEVRWFDPW 110
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,162,318
Number of Sequences: 237096
Number of extensions: 1361383
Number of successful extensions: 5009
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 4187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5005
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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