Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1194X
(498 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p pro... 99 2e-21
AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA... 99 2e-21
U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein ... 93 1e-19
AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p pro... 35 0.053
AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding ... 35 0.053
AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA... 35 0.053
AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p pro... 33 0.28
AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB... 33 0.28
AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA... 33 0.28
AE014296-863|AAF47913.1| 106|Drosophila melanogaster CG13721-PA... 29 2.6
BT029040-1|ABJ16973.1| 460|Drosophila melanogaster IP03738p pro... 29 3.5
X54251-1|CAA38152.1| 1596|Drosophila melanogaster nuclear protei... 26 5.1
BT023751-1|AAZ41759.1| 1594|Drosophila melanogaster RH56202p pro... 26 6.6
AE013599-1817|AAF58300.2| 1594|Drosophila melanogaster CG8118-PB... 26 6.6
AE013599-1816|AAF58299.1| 1594|Drosophila melanogaster CG8118-PA... 26 6.6
AE013599-1819|AAS64855.1| 433|Drosophila melanogaster CG8118-PC... 26 7.4
AY070499-1|AAL47970.1| 428|Drosophila melanogaster GH07841p pro... 26 7.4
>AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p
protein.
Length = 352
Score = 99 bits (238), Expect = 2e-21
Identities = 48/70 (68%), Positives = 56/70 (80%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQ+AIARNNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV+GS +AADK R
Sbjct: 89 VHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKRRN 148
Query: 434 YHRQYFPRQR 463
+ R + + R
Sbjct: 149 F-RPWMKKNR 157
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVF
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTREDVF 88
>AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA
protein.
Length = 352
Score = 99 bits (238), Expect = 2e-21
Identities = 48/70 (68%), Positives = 56/70 (80%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQ+AIARNNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV+GS +AADK R
Sbjct: 89 VHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKRRN 148
Query: 434 YHRQYFPRQR 463
+ R + + R
Sbjct: 149 F-RPWMKKNR 157
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVF
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTREDVF 88
>U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein
protein.
Length = 359
Score = 93.5 bits (222), Expect = 1e-19
Identities = 47/70 (67%), Positives = 55/70 (78%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRG 433
+HQ+AIA NNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV+GS +AADK R
Sbjct: 90 VHQSAIA-NNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKRRN 148
Query: 434 YHRQYFPRQR 463
+ R + + R
Sbjct: 149 F-RPWMKKNR 157
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVF
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTREDVF 89
>AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p
protein.
Length = 195
Score = 35.1 bits (77), Expect = 0.053
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G KWFNV G+GF+ ND ++VF
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVF 65
>AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding
protein LIN-28 protein.
Length = 195
Score = 35.1 bits (77), Expect = 0.053
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G KWFNV G+GF+ ND ++VF
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVF 65
>AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA
protein.
Length = 195
Score = 35.1 bits (77), Expect = 0.053
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G KWFNV G+GF+ ND ++VF
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVF 65
>AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p
protein.
Length = 143
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKEDVFC 257
V+G VK F+ G+GFI N EDVFC
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFC 82
>AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB,
isoform B protein.
Length = 143
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKEDVFC 257
V+G VK F+ G+GFI N EDVFC
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFC 82
>AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA,
isoform A protein.
Length = 143
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 174 VSGTVKWFNVKSGYGFINRNDTKEDVFC 257
V+G VK F+ G+GFI N EDVFC
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFC 82
>AE014296-863|AAF47913.1| 106|Drosophila melanogaster CG13721-PA
protein.
Length = 106
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/69 (36%), Positives = 30/69 (43%)
Frame = +2
Query: 284 PRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLRGYHRQYFPRQR 463
P++ GD EA V A EK E A G G SPY L GY+ Y+P
Sbjct: 29 PQEGREEGGDQEA---NVEAEEKDLEGAASFGYG---YYSSPY----LGGYYGGYWPHYS 78
Query: 464 GGLGGVGAP 490
G G+G P
Sbjct: 79 GSYYGIGYP 87
>BT029040-1|ABJ16973.1| 460|Drosophila melanogaster IP03738p
protein.
Length = 460
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 269 IARNNPRKAVRSVGDGEAVEFAVVAGE-KGFEAAGVTGPGGEPVKGSPYAAD 421
+AR P DG V AV+A + G AG T G PV G+ AAD
Sbjct: 202 VARAVPATDGNGAPDGVPVAGAVLATDGNGAPVAGATDGNGAPVAGAVPAAD 253
>X54251-1|CAA38152.1| 1596|Drosophila melanogaster nuclear protein
protein.
Length = 1596
Score = 26.2 bits (55), Expect(2) = 5.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 368 GVTGPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVG 484
G G G G + + + H+Q +Q GGLGG+G
Sbjct: 376 GGGGNGNNNNNGGDHHQQQQQHQHQQQQQQQGGGLGGLG 414
Score = 20.6 bits (41), Expect(2) = 5.1
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 464 GGLGGVGAP 490
GGLGG+G P
Sbjct: 434 GGLGGMGMP 442
>BT023751-1|AAZ41759.1| 1594|Drosophila melanogaster RH56202p
protein.
Length = 1594
Score = 25.8 bits (54), Expect(2) = 6.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 377 GPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVG 484
G GG + D + H+Q +Q GGLGG+G
Sbjct: 375 GGGGGNGNNNNNGGDHHQQQHQQQQQQQGGGLGGLG 410
Score = 20.6 bits (41), Expect(2) = 6.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 464 GGLGGVGAP 490
GGLGG+G P
Sbjct: 430 GGLGGMGMP 438
>AE013599-1817|AAF58300.2| 1594|Drosophila melanogaster CG8118-PB,
isoform B protein.
Length = 1594
Score = 25.8 bits (54), Expect(2) = 6.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 377 GPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVG 484
G GG + D + H+Q +Q GGLGG+G
Sbjct: 375 GGGGGNGNNNNNGGDHHQQQHQQQQQQQGGGLGGLG 410
Score = 20.6 bits (41), Expect(2) = 6.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 464 GGLGGVGAP 490
GGLGG+G P
Sbjct: 430 GGLGGMGMP 438
>AE013599-1816|AAF58299.1| 1594|Drosophila melanogaster CG8118-PA,
isoform A protein.
Length = 1594
Score = 25.8 bits (54), Expect(2) = 6.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 377 GPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVG 484
G GG + D + H+Q +Q GGLGG+G
Sbjct: 375 GGGGGNGNNNNNGGDHHQQQHQQQQQQQGGGLGGLG 410
Score = 20.6 bits (41), Expect(2) = 6.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 464 GGLGGVGAP 490
GGLGG+G P
Sbjct: 430 GGLGGMGMP 438
>AE013599-1819|AAS64855.1| 433|Drosophila melanogaster CG8118-PC,
isoform C protein.
Length = 433
Score = 25.8 bits (54), Expect(2) = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 377 GPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVG 484
G GG + D + H+Q +Q GGLGG+G
Sbjct: 147 GGGGGNGNNNNNGGDHHQQQHQQQQQQQGGGLGGLG 182
Score = 20.6 bits (41), Expect(2) = 7.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 464 GGLGGVGAP 490
GGLGG+G P
Sbjct: 202 GGLGGMGMP 210
>AY070499-1|AAL47970.1| 428|Drosophila melanogaster GH07841p
protein.
Length = 428
Score = 25.8 bits (54), Expect(2) = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 377 GPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVG 484
G GG + D + H+Q +Q GGLGG+G
Sbjct: 147 GGGGGNGNNNNNGGDHHQQQHQQQQQQQGGGLGGLG 182
Score = 20.6 bits (41), Expect(2) = 7.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 464 GGLGGVGAP 490
GGLGG+G P
Sbjct: 202 GGLGGMGMP 210
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,359,259
Number of Sequences: 53049
Number of extensions: 385420
Number of successful extensions: 1541
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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