Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1194X
(498 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 82 3e-16
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 58 3e-09
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 58 3e-09
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 56 2e-08
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 52 3e-07
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 36 0.012
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 36 0.012
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 36 0.012
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 36 0.012
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 29 2.5
AL110500-17|CAE18040.1| 190|Caenorhabditis elegans Hypothetical... 28 3.3
U88166-3|AAO44910.1| 160|Caenorhabditis elegans Collagen protei... 28 4.3
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 4.3
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 4.3
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 27 7.6
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 27 7.6
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 27 7.6
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z69662-1|CAA93499.1| 359|Caenorhabditis elegans Hypothetical pr... 27 10.0
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 27 10.0
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 81.8 bits (193), Expect = 3e-16
Identities = 44/81 (54%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +2
Query: 254 LHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK-LR 430
+HQTAI NNP K +RS+GD E V F +V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 48 VHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAADRDAE 107
Query: 431 GYHRQYFPRQRGGLGGVGAPR 493
R R RG GG G R
Sbjct: 108 NAARGRGGRGRGRRGGRGGIR 128
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V A KV GTVKWFNVK+GYGFINR DT ED+F
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIF 47
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 58.4 bits (135), Expect = 3e-09
Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +2
Query: 254 LHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLR 430
+HQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS +A L
Sbjct: 119 VHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFARTLLT 178
Query: 431 GYHRQYFPRQRG-GLGGVGAPRR 496
+ + RG G G GAPR+
Sbjct: 179 HWRTRGRGGARGRGGRGRGAPRQ 201
Score = 34.3 bits (75), Expect = 0.050
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVF 254
VI V G VKWF+V+ YGF+ R+ D ED F
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFF 118
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 58.4 bits (135), Expect = 3e-09
Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +2
Query: 254 LHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLR 430
+HQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS +A L
Sbjct: 119 VHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFARTLLT 178
Query: 431 GYHRQYFPRQRG-GLGGVGAPRR 496
+ + RG G G GAPR+
Sbjct: 179 HWRTRGRGGARGRGGRGRGAPRQ 201
Score = 34.3 bits (75), Expect = 0.050
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVF 254
VI V G VKWF+V+ YGF+ R+ D ED F
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFF 118
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 55.6 bits (128), Expect = 2e-08
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +2
Query: 254 LHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLR 430
+HQTAIA++ K +R++GD E V F +V G+ G EAA VTGP G+ V GS Y L
Sbjct: 93 VHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRYRHKLLS 152
Query: 431 GYHRQYFPR 457
+ + PR
Sbjct: 153 RFRKNRKPR 161
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 162 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFCIRLPSPVTTHVRLCARSATER 320
I + G VKW++V YGFI+RND ++D+F H A+SATE+
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIF---------VHQTAIAKSATEK 105
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 51.6 bits (118), Expect = 3e-07
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +2
Query: 254 LHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKLR 430
+HQTAI++++ K +R++ D E V F +V G+ G EAA VTGP G V GS Y L
Sbjct: 91 VHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKYRHQLLS 150
Query: 431 GYHRQYFPR 457
+ + P+
Sbjct: 151 RFRKNRKPK 159
Score = 37.9 bits (84), Expect = 0.004
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 159 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVF 254
V+ + G VKW++V YGFI+R+D ++DVF
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVF 90
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 36.3 bits (80), Expect = 0.012
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G+ KWFNV GYGF+ + T ED+F
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLF 48
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 36.3 bits (80), Expect = 0.012
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G+ KWFNV GYGF+ + T ED+F
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLF 79
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 36.3 bits (80), Expect = 0.012
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G+ KWFNV GYGF+ + T ED+F
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLF 79
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 36.3 bits (80), Expect = 0.012
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 180 GTVKWFNVKSGYGFINRNDTKEDVF 254
G+ KWFNV GYGF+ + T ED+F
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLF 79
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 341 AGEKGFEAAGV--TGPGGEPVKGSPYAADKLRGYHRQY-FPRQRGGLGGVG 484
+GEKGF GV GP G P D L G+ + P RG G VG
Sbjct: 487 SGEKGFPGTGVNKVGPDGYPGTPGERGMDGLPGFPGLHGEPGMRGQQGEVG 537
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 483 PTPPSPPR*RGKYCRW*PRSLSAA*GEPFTGSPPGPVTP 367
P PP PP RG+ + + G+ G+PPGP P
Sbjct: 175 PGPPGPPGVRGEPGSPGEKGPTGDRGKVLNGAPPGPTGP 213
>AL110500-17|CAE18040.1| 190|Caenorhabditis elegans Hypothetical
protein Y87G2A.17 protein.
Length = 190
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 286 WVVTGDGSLMQNTSSLVSFLLMKPYPLLTLNHFTV 182
WV+ G+G L ++ SS +SF P P+ +H +
Sbjct: 150 WVI-GEGPLFRSISSAISFYRRHPLPIRGADHLVL 183
>U88166-3|AAO44910.1| 160|Caenorhabditis elegans Collagen protein
53 protein.
Length = 160
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 344 GEKGFEAAGVTGPGGEPVK-GSPYAADKLRGYHRQYFPRQRGGLGG 478
G+KGF GV GP GEP + G Y +D G + PR G G
Sbjct: 49 GDKGFP--GVAGPAGEPGEPGHIYVSDGPPGKDGETGPRGPPGEKG 92
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -1
Query: 489 GAPTPPSPPR*RGKYCRW*PRSLSAA*GEPFTGSPPGP 376
G P PP PP G+ AA GEP PPGP
Sbjct: 154 GPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGP 191
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -1
Query: 489 GAPTPPSPPR*RGKYCRW*PRSLSAA*GEPFTGSPPGP 376
G P PP PP G+ AA GEP PPGP
Sbjct: 154 GPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGP 191
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 290 YVGCYGRWQSDAKHIFLGVIPV-DETISTLDVEPFHSA 180
YVG G+W + + +G + + DE + +++PF+ A
Sbjct: 1086 YVGTDGKWPRNRLNSIVGYLEIDDEPVRIDEIKPFYMA 1123
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 290 YVGCYGRWQSDAKHIFLGVIPV-DETISTLDVEPFHSA 180
YVG G+W + + +G + + DE + +++PF+ A
Sbjct: 1038 YVGTDGKWPRNRLNSIVGYLEIDDEPVRIDEIKPFYMA 1075
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 359 EAAGVTGPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVGAP 490
+ G GP G P P A G P Q G G GAP
Sbjct: 235 DVPGTPGPAGPPGPAGPAGAPGQPGQAGHAQPGQPGPQGDAGAP 278
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -1
Query: 489 GAPTPPSPPR*RGKYCRW*PRSLSAA*GEPFTGSPPGP 376
G P PP P RG P++ G P PPGP
Sbjct: 208 GPPGPPGPKGPRGTPGPTGPKNFYITSGPPGPPGPPGP 245
>Z69662-1|CAA93499.1| 359|Caenorhabditis elegans Hypothetical
protein F56D5.1 protein.
Length = 359
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 335 VVAGE--KGFEAA-GVTGPGGEPVKGSPYAADKLRGYHRQYFPRQRGGLGGVG 484
++AGE KG G GP G P G+ + +RG + P Q+GG+GG G
Sbjct: 203 IIAGEGIKGPPGLQGSQGPKGPP--GNSGRSSNIRGPSGK--PGQQGGIGGTG 251
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = -1
Query: 498 HLRGAPT---PPSPPR*RGKYCRW*PRSLSAA*GEPFTGSPPGPVTPAAS 358
H GAP PP P G P L G P +G PPGP P+ +
Sbjct: 141 HSTGAPPSGGPPGPFDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGA 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,950,392
Number of Sequences: 27780
Number of extensions: 186024
Number of successful extensions: 724
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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