Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1193X
         (492 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.1  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   1.1  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   1.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   2.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   6.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   6.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.0  
AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    21   8.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 209 NNPRKAVRSVGEGEAGSLPWLPGRKA 286
           NN  + V S G GEAG     PG  A
Sbjct: 880 NNHDQGVPSAGPGEAGEYTKQPGMLA 905


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 185 VHQTAIARNNPRKAVRS 235
           +HQT I  NNPR   R+
Sbjct: 46  IHQTVIYHNNPRDPNRA 62


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 460 GWAGVHDVLILFCVELLHRLV 398
           G+ GVH +LILF   LLH +V
Sbjct: 265 GFYGVHTLLILFSC-LLHLVV 284


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 338 GEPFTGSPPGPVTPAASKPFS 276
           G   T S  GPV PAA  P S
Sbjct: 128 GANLTNSLTGPVRPAACTPDS 148


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 211 VTGDGSLMHKHIF 173
           VTG+  +MH+H F
Sbjct: 3   VTGNLGIMHRHCF 15


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 291 SSWCYWSRW*ASKRLTLCCRQAPWLPP 371
           S+WC +S + ++ R  +  +  P+L P
Sbjct: 145 STWCNYSAYSSASRHHVDHQPVPYLTP 171


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 298 GVTGPGGEPVKGSPYAADKRRGYHRQ 375
           GV GP G P   +    +   G+H Q
Sbjct: 147 GVLGPTGSPPLTTQSMNNHHMGHHMQ 172


>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 298 GVTGPGGEPVKGSPYAADKRR 360
           G+T  G  P K S Y   ++R
Sbjct: 48  GITSGGPIPTKSSKYPIKRKR 68


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 121 MVQRQEWIWFHQQE*HQGRCVCASDCHR 204
           MVQ  + + FH  E  +   +C + CHR
Sbjct: 147 MVQAIQVLRFHLLELEKVHELCDNFCHR 174


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 298 GVTGPGGEPVKGSPYAADKRRGYHRQ 375
           GV GP G P   +    +   G+H Q
Sbjct: 149 GVLGPTGSPPLTTQSMNNHHMGHHMQ 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,260
Number of Sequences: 336
Number of extensions: 2003
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)