Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1193X
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.50 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   1.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   2.0  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    26   3.5  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.2  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    25   6.2  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    25   8.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 332  PFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYV 216
            P + +PP P TP+A  P  P  TA +PP+    S  P V
Sbjct: 1212 PPSTAPPVP-TPSAGLPPVPVPTAKAPPVPAPSSEAPSV 1249


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPPLLRR--PSAQP 222
           P T +PP P  P  S   +P   + +PP+     P AQP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 314 PGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
           P  + P+ + PF P T+A  PP    P   P
Sbjct: 474 PSNLVPSQNAPFIPGTSAPLPPTTFAPPGVP 504


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -2

Query: 326 TGSPPGPVTPAASK--PFSPATTANSPP 249
           T SPP P+TP+ S+  PFS +T + S P
Sbjct: 368 TTSPP-PLTPSTSRDYPFSASTISPSTP 394


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -2

Query: 314 PGPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
           PG ++   +    P+     P     PS QPY G
Sbjct: 246 PGSISSYTNSNLGPSAGFRPPTFFSSPSPQPYSG 279


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 329 FTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPY 219
           FT  P  P  P ASKP S     N P  +  P+   Y
Sbjct: 36  FTPCPVPPSFPKASKPNSNQPYPNGPVCIYPPNIYLY 72


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -1

Query: 351 VCSIR*AFYWLTTGTSNTSCFKAFLPGNHGK-LPASPSPTERTA-LRGLLRAMAV 193
           +CS +  F WL T TS       F+ G H K  P  P    RT  LR    A+ V
Sbjct: 240 ICSHQGEFIWLRTKTSAYWYHMNFVHGIHSKGRPYQPPIEFRTVRLRKTRNAIGV 294


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 320 SPPGPVTPAASKPFSPATTANSPPLLRRPSAQ 225
           SPP P+ P +    +PA  + S P L  PS++
Sbjct: 270 SPPRPIAPVS---MNPAINSTSKPPLPPPSSR 298


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPP 249
           P TG+   PVTP    P S ++T+  PP
Sbjct: 292 PPTGNSTTPVTPTV-PPTSTSSTSTPPP 318



 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPP 249
           P TG+   PVTP    P S ++T+  PP
Sbjct: 346 PPTGNSTTPVTPTV-PPTSTSSTSTPPP 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,020
Number of Sequences: 5004
Number of extensions: 31011
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)