Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1193X
(492 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38) 42 2e-04
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_53945| Best HMM Match : POPLD (HMM E-Value=1) 30 1.2
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 29 1.6
SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2) 29 2.1
SB_23088| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3) 29 2.1
SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05) 29 2.8
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_26212| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 28 3.6
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 3.6
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0) 28 3.6
SB_24363| Best HMM Match : COesterase (HMM E-Value=1.7e-16) 28 4.8
SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16) 28 4.8
SB_47005| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07) 27 6.4
SB_7820| Best HMM Match : zf-HYPF (HMM E-Value=2.5) 27 6.4
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 27 8.4
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_37025| Best HMM Match : Homeobox (HMM E-Value=1.3e-16) 27 8.4
SB_14695| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 27 8.4
>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 44.4 bits (100), Expect = 5e-05
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = +1
Query: 280 KGFEAAGVTGPGGEPVKGSPYAADKRRGYHR 372
+G EA+ VTGP GEPV+GS YA D+RR +R
Sbjct: 13 QGLEASNVTGPDGEPVQGSKYAPDRRRRNNR 43
>SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)
Length = 80
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = +2
Query: 92 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGEGEAGSLPWL 271
++ + +GTVKWFN + GYGFI + +D+FVH AI + +S+ EG+A +
Sbjct: 12 MSNRQNGTVKWFNDEKGYGFIT-PQSGDDLFVHFKAIQSD----GFKSLKEGQAVTFVAT 66
Query: 272 PGRK 283
G+K
Sbjct: 67 RGQK 70
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 31.1 bits (67), Expect = 0.52
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 326 TGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
T +PP P T A SP TT +SPP + P
Sbjct: 110 TSAPPPPTTTAPPATTSPPTTTDSPPTTAAETLPP 144
>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2286
Score = 30.7 bits (66), Expect = 0.68
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 332 PFTGSPP-GPVTPAASKPFSPATTANSPPLLRRPSAQP 222
PF S P GP PA +SPA +A +P PS P
Sbjct: 1676 PFADSDPVGPAAPARHPHYSPAESACAPLPNEEPSVSP 1713
>SB_53945| Best HMM Match : POPLD (HMM E-Value=1)
Length = 465
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 314 PGPVTPAASKPFSPATTANSPPL 246
P TPA + P SPAT A+ PP+
Sbjct: 31 PPETTPAPTTPTSPATPASGPPI 53
>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 440
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVGCY 207
P G+PP P A P N PP+ R P P Y
Sbjct: 399 PLLGNPPSSQAPPARGPRPMPLFPNGPPMQRMPMGGPQPHSY 440
>SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2)
Length = 694
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 314 PGPVTPAASKPFSPATTANSPPL 246
P TPA + P SPAT A+ PP+
Sbjct: 139 PLETTPAPTTPTSPATPASGPPI 161
>SB_23088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 314 PGPVTPAASKPFSPATTANSPPL 246
P TPA + P SPAT A+ PP+
Sbjct: 35 PLETTPAPTTPTSPATPASGPPI 57
>SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3)
Length = 736
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 314 PGPVTPAASKPFSPATTANSPPL 246
P TPA + P SPAT A+ PP+
Sbjct: 60 PLQTTPAPTTPTSPATPASGPPI 82
>SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)
Length = 288
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSP-ATTANSPPLLRRPSAQPYVGCYGRWQSDAQTHLPWCHS 159
P TG+P P TP +KP P T +PP P + V W A WC+S
Sbjct: 221 PTTGAP--PPTPVTNKPPPPRPATTQAPPPTAAPGSCKAVNA---WAGQANMD-DWCNS 273
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 299 PAASKPFSPATTANSPP 249
PA +KP SPAT A+ PP
Sbjct: 649 PAPTKPISPATPASGPP 665
>SB_26212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 321 ASKRLTLCCRQAPWLPP 371
AS T+C RQAPWL P
Sbjct: 19 ASPTWTICLRQAPWLSP 35
>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 95 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVH 190
AEK G V ++K +GFI R D ++F H
Sbjct: 201 AEKYQGVVS--SMKESFGFIERADKVSEIFFH 230
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 335 EPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
+P +P VTP ++P P++ PP + P+ P
Sbjct: 320 QPQMVAPSSTVTPPVTEPAPPSSVVAPPPAVPTPATAP 357
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 311 GPVTPAASKPFSPATTANSPPLLRRPSAQPYV 216
GPVTP A + + T L++ P QPY+
Sbjct: 163 GPVTPMAQEQWDTILTMIPARLVQSPQLQPYI 194
>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 530
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Frame = -2
Query: 323 GSPPGPVTPAASKPFSPATTANS-----PPLLRRPSAQPYVGCYG 204
GS PG VTP + P P TT + P R P QP G G
Sbjct: 168 GSCPGTVTPVPTAPPPPPTTTAAITTKVPVTTRAPITQPPSGSCG 212
>SB_24363| Best HMM Match : COesterase (HMM E-Value=1.7e-16)
Length = 635
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 287 KPFSPATTANSPPLLRRPSAQPYVGC 210
+PF P++ + PPLL S P+ C
Sbjct: 568 QPFDPSSKSRKPPLLSGKSCNPFSFC 593
>SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPY-VGCYGRW 198
P T +T P SP++ A SPP L P+ GC+ W
Sbjct: 464 PSTAEDNTGLTNYGVTPLSPSSLAVSPPTLTTTLPSPFCFGCHDVW 509
>SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 997
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 314 PGPVTPAASKPFSPATTANSPPLLRRP 234
PGP P+ S P + + T PP +RP
Sbjct: 949 PGPDPPSVSSPAATSATEKPPPSDKRP 975
>SB_47005| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 314 PGPVTPAASKPFSPATTANSPPL 246
P TPA + P SPAT + PP+
Sbjct: 31 PLETTPAPTTPTSPATPTSGPPI 53
>SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 596
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -2
Query: 332 PFTGSPP-GPVTPAASKPFSPATTANSPPLLRRPSAQP 222
PF S P GP A +SPA +A +P PS P
Sbjct: 360 PFADSDPVGPAASARHPHYSPAESACAPLPNEEPSVSP 397
>SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07)
Length = 487
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSP 252
G P+T + PGP + +SP T + SP
Sbjct: 309 GGPYTPNTPGPAMYGSEPTYSPYTQSPSP 337
>SB_7820| Best HMM Match : zf-HYPF (HMM E-Value=2.5)
Length = 307
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPP 249
P TG P GP A+S S T + +PP
Sbjct: 165 PTTGGPSGPTGGASSATPSATTASTAPP 192
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 317 PPGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
PP P +P A+ P +P A +P P+A P
Sbjct: 51 PPPPPSPPAAAPAAPPPPAAAPAAPPPPAAPP 82
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 335 EPFTGSPPGPVTPA-ASKPFSPATTANSPPLLRRPSA 228
+P T +PPG TP + PATT + P P A
Sbjct: 119 KPTTTTPPGTTTPTKPTTTTPPATTTPTKPTTTTPPA 155
>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2391
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 314 PGPVTPAASKPFSPATTANSPPL 246
P TPA + P SPA A+ PP+
Sbjct: 93 PLETTPAPTTPTSPAAPASGPPI 115
>SB_37025| Best HMM Match : Homeobox (HMM E-Value=1.3e-16)
Length = 154
Score = 27.1 bits (57), Expect = 8.4
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = -2
Query: 338 GEPFT--GSPPGPVTPA--ASKPFSPATTANSPPLLR--RPSAQPYVGCYGRWQSDAQTH 177
G PF G+PP P+ PA S P SP P+ R +P C GR ++ TH
Sbjct: 90 GYPFQYPGTPPPPMYPAFPPSFPSSPPPEYPGLPVSSPGRVCTRPDCNCGGRPLNEMPTH 149
Query: 176 L 174
+
Sbjct: 150 M 150
>SB_14695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 27.1 bits (57), Expect = 8.4
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = -2
Query: 338 GEPFT--GSPPGPVTPA--ASKPFSPATTANSPPLLR--RPSAQPYVGCYGRWQSDAQTH 177
G PF G+PP P+ PA S P SP P+ R +P C GR ++ TH
Sbjct: 143 GYPFQYPGTPPPPMYPAFPPSFPSSPPPEYPGLPVSSPGRVCTRPDCNCGGRPLNEMPTH 202
Query: 176 L 174
+
Sbjct: 203 M 203
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 308 PVTPAASKPFSPATTANSPP 249
P+TPAA+ P SPA ++ P
Sbjct: 960 PLTPAATSPVSPAAAPSTTP 979
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,480,887
Number of Sequences: 59808
Number of extensions: 278336
Number of successful extensions: 1198
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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