Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1193X
(492 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 90 9e-19
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 57 6e-09
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 54 7e-08
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 48 3e-06
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 48 3e-06
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 47 9e-06
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 47 9e-06
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 47 9e-06
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 47 9e-06
Z22178-8|CAD82913.1| 307|Caenorhabditis elegans Hypothetical pr... 32 0.20
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 32 0.26
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 32 0.26
Z79600-12|CAB70221.2| 415|Caenorhabditis elegans Hypothetical p... 30 0.79
Z75540-7|CAB70215.2| 415|Caenorhabditis elegans Hypothetical pr... 30 0.79
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 1.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 1.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 1.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 1.8
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 28 3.2
U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protei... 28 3.2
U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protei... 28 3.2
AL031269-2|CAA20332.1| 299|Caenorhabditis elegans Hypothetical ... 28 3.2
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 4.2
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 4.2
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 4.2
AF025460-2|AAF02169.3| 545|Caenorhabditis elegans Prion-like-(q... 28 4.2
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 27 5.6
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 27 5.6
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr... 27 5.6
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 27 5.6
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 27 5.6
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 27 5.6
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 27 5.6
AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical... 27 5.6
Z70757-7|CAA94803.2| 387|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 27 9.8
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 27 9.8
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 27 9.8
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 89.8 bits (213), Expect = 9e-19
Identities = 41/65 (63%), Positives = 47/65 (72%)
Frame = +2
Query: 89 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGEGEAGSLPW 268
V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI NNP K +RS+G+ E
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75
Query: 269 LPGRK 283
+ G K
Sbjct: 76 VEGSK 80
Score = 48.0 bits (109), Expect = 4e-06
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = +1
Query: 259 FAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 354
F +V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 73 FDIVEGSKGLEAASVTGPDGGPVQGSKYAADR 104
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 57.2 bits (132), Expect = 6e-09
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +2
Query: 92 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGEGE 250
I + G VKW++V YGFI+RND ++D+FVHQTAIA++ K +R++G+ E
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDE 115
Score = 33.9 bits (74), Expect = 0.064
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1
Query: 259 FAVVAGEKGFEAAGVTGPGGEPVKGSPY 342
F +V G+ G EAA VTGP G+ V GS Y
Sbjct: 119 FDLVEGKNGPEAANVTGPNGDNVIGSRY 146
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 53.6 bits (123), Expect = 7e-08
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +2
Query: 89 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK 223
V+ + G VKW++V YGFI+R+D ++DVFVHQTAI++++ K
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEK 103
Score = 33.5 bits (73), Expect = 0.085
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +1
Query: 259 FAVVAGEKGFEAAGVTGPGGEPVKGSPY 342
F +V G+ G EAA VTGP G V GS Y
Sbjct: 117 FDLVDGKNGPEAANVTGPAGVNVSGSKY 144
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Frame = +2
Query: 89 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRK 223
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIK 131
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1
Query: 259 FAVVAGEKGFEAAGVTGPGGEPVKGSPYA 345
F +V G KG EAA VTGP GE V+GS +A
Sbjct: 145 FDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Frame = +2
Query: 89 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRK 223
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIK 131
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1
Query: 259 FAVVAGEKGFEAAGVTGPGGEPVKGSPYA 345
F +V G KG EAA VTGP GE V+GS +A
Sbjct: 145 FDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 46.8 bits (106), Expect = 9e-06
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +2
Query: 110 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGEGE 250
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ EGE
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGE 66
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 46.8 bits (106), Expect = 9e-06
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +2
Query: 110 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGEGE 250
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ EGE
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGE 97
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 46.8 bits (106), Expect = 9e-06
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +2
Query: 110 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGEGE 250
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ EGE
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGE 97
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 46.8 bits (106), Expect = 9e-06
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +2
Query: 110 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGEGE 250
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ EGE
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGE 97
>Z22178-8|CAD82913.1| 307|Caenorhabditis elegans Hypothetical
protein F54C8.7b protein.
Length = 307
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 326 TGSPPGPVTPAASKPFSPATTANSPP 249
T SPP P P A PF+P T +S P
Sbjct: 5 TASPPEPSAPPADSPFAPVTQNDSSP 30
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 31.9 bits (69), Expect = 0.26
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 326 TGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYV 216
TGSP T +KP P++T + P + P++QP V
Sbjct: 530 TGSPTTQTTAPVTKPTVPSSTTQTAPPVTTPTSQPPV 566
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 31.9 bits (69), Expect = 0.26
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 326 TGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYV 216
TGSP T +KP P++T + P + P++QP V
Sbjct: 586 TGSPTTQTTAPVTKPTVPSSTTQTAPPVTTPTSQPPV 622
>Z79600-12|CAB70221.2| 415|Caenorhabditis elegans Hypothetical
protein F37D6.6 protein.
Length = 415
Score = 30.3 bits (65), Expect = 0.79
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Frame = -2
Query: 314 PGPVTPAASKPFSPATTANSPPLLRRPSAQPYVGC-YGRW---QSDAQTH----LPWC 165
PGP + P + P + RP + PY+ C RW Q DA H LPWC
Sbjct: 68 PGPPMDERVEEDPPDEDSGLIPQIDRPMSMPYLCCKLWRWKDLQVDAALHRLEALPWC 125
>Z75540-7|CAB70215.2| 415|Caenorhabditis elegans Hypothetical
protein F37D6.6 protein.
Length = 415
Score = 30.3 bits (65), Expect = 0.79
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Frame = -2
Query: 314 PGPVTPAASKPFSPATTANSPPLLRRPSAQPYVGC-YGRW---QSDAQTH----LPWC 165
PGP + P + P + RP + PY+ C RW Q DA H LPWC
Sbjct: 68 PGPPMDERVEEDPPDEDSGLIPQIDRPMSMPYLCCKLWRWKDLQVDAALHRLEALPWC 125
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
G P +G PPGP P+ + P + PP L PS P G
Sbjct: 144 GAPPSGGPPGPFDPSGAPP------SGGPPGLFDPSGAPPSG 179
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
G P +G PPGP P+ + P S T P PS P
Sbjct: 189 GAPPSGGPPGPFNPSEAPP-SGGPTGPFDPSGAPPSGGP 226
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
G P +G PPGP P+ ++P + PP PS P G
Sbjct: 294 GAPPSGGPPGPFDPSGAQP------SGGPPGPFNPSGAPPSG 329
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASK-------PFSP--ATTANSPPLLRRPSAQPYVG 213
G P +G PPGP P+ + PF+P A + PP PS P G
Sbjct: 399 GAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG 449
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASK-------PFSP--ATTANSPPLLRRPSAQPYVG 213
G P +G PPGP P+ + PF P A + PP PS P G
Sbjct: 219 GAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 269
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
G P +G PPGP P+ + P + PP PS P G
Sbjct: 444 GAPPSGGPPGPFNPSGAPP------SGGPPGPFNPSGAPPSG 479
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
G P +G PPGP P+ + P + PP PS P G
Sbjct: 324 GAPPSGGPPGPFDPSGAPP------SGGPPGPFNPSGAPPSG 359
Score = 27.1 bits (57), Expect = 7.4
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASK-------PFSP--ATTANSPPLLRRPSAQPYVG 213
G P +G PPGP P+ + PF P A + PP PS P G
Sbjct: 369 GAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 419
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
G P +G PPGP P+ + P + PP PS P G
Sbjct: 474 GAPPSGGPPGPFDPSGAPP------SGGPPGPFNPSGAPPSG 509
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYV 216
G P +G PPGP P+ + P S P PS P V
Sbjct: 489 GAPPSGGPPGPFNPSGAPP-SGGPPGPFDPSGAPPSGMPPV 528
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPA-TTANSPPLLRRPSAQPYVGCYGRWQSDAQTHLP 171
G P TGSPP + P+ K +P SPP P+ +P+ G G+ +S P
Sbjct: 429 GSPPTGSPPTGL-PSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGP 484
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
P TGSPP P P S P PA + PP P P
Sbjct: 267 PRTGSPPPP--PTGSPPPPPAGGSPPPPRAGSPPPPP 301
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
P TGSPP P PA P P A SPP P P G
Sbjct: 275 PPTGSPPPP--PAGGSP--PPPRAGSPPPPPPPRGSPPTG 310
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -2
Query: 326 TGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
+GSPP P PAA P P T + PP P P G
Sbjct: 252 SGSPPPP--PAAGSPPPPRTGSPPPPPTGSPPPPPAGG 287
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFS------PATTANSPPLLRRPSAQP 222
P GSPP P P S P + P A SPP R S P
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP 274
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPA-TTANSPPLLRRPSAQPYVGCYGRWQSDAQTHLP 171
G P TGSPP + P+ K +P SPP P+ +P+ G G+ +S P
Sbjct: 450 GSPPTGSPPTGL-PSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGP 505
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
P TGSPP P P S P PA + PP P P
Sbjct: 288 PRTGSPPPP--PTGSPPPPPAGGSPPPPRAGSPPPPP 322
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
P TGSPP P PA P P A SPP P P G
Sbjct: 296 PPTGSPPPP--PAGGSP--PPPRAGSPPPPPPPRGSPPTG 331
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -2
Query: 326 TGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
+GSPP P PAA P P T + PP P P G
Sbjct: 273 SGSPPPP--PAAGSPPPPRTGSPPPPPTGSPPPPPAGG 308
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFS------PATTANSPPLLRRPSAQP 222
P GSPP P P S P + P A SPP R S P
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP 295
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPA-TTANSPPLLRRPSAQPYVGCYGRWQSDAQTHLP 171
G P TGSPP + P+ K +P SPP P+ +P+ G G+ +S P
Sbjct: 435 GSPPTGSPPTGL-PSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGP 490
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
P TGSPP P P S P PA + PP P P
Sbjct: 273 PRTGSPPPP--PTGSPPPPPAGGSPPPPRAGSPPPPP 307
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
P TGSPP P PA P P A SPP P P G
Sbjct: 281 PPTGSPPPP--PAGGSP--PPPRAGSPPPPPPPRGSPPTG 316
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -2
Query: 326 TGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
+GSPP P PAA P P T + PP P P G
Sbjct: 258 SGSPPPP--PAAGSPPPPRTGSPPPPPTGSPPPPPAGG 293
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFS------PATTANSPPLLRRPSAQP 222
P GSPP P P S P + P A SPP R S P
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP 280
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQ 225
G + PP P P S P S T PP ++PS Q
Sbjct: 149 GATSSAPPPPPPPPPVSVPSSKPTPPPPPPAQQKPSFQ 186
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 335 EPFTGSPPGPVTPAASKPFSPATTANSPPLLRRP 234
EP T +PP P T A P P T A PP + P
Sbjct: 169 EPTTEAPPPPTTKA---PPPPTTKAPPPPTTKAP 199
>U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protein
10 protein.
Length = 294
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -2
Query: 323 GSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVGC 210
G P P TP A P TA PL P +Q V C
Sbjct: 110 GQPGAPGTPGAPGPKGDDNTATFAPLTCAPVSQDCVKC 147
>U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protein
144 protein.
Length = 306
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -2
Query: 323 GSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVGC 210
G P P TP A P TA PL P +Q V C
Sbjct: 122 GQPGAPGTPGAPGPKGDDNTATFAPLTCAPVSQDCVKC 159
>AL031269-2|CAA20332.1| 299|Caenorhabditis elegans Hypothetical
protein VW02B12L.3 protein.
Length = 299
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 347 AA*GEPFTGSPPGPVTPAASKPFSPATTANSPPLLR 240
AA P +PP P PAA +PA A+ PP +R
Sbjct: 149 AAPARPVAAAPPKP-RPAAPAVAAPAVKASVPPTVR 183
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVGCYG 204
G+P +P P+TP A P PA P +P G G
Sbjct: 202 GQPGQDAPSEPITPGAPGPAGPAGPQGQPGAPGQPGHDGQPGAPG 246
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 347 AA*GEPFTGSPPGP--VTPAASKPFSPATTANSPPLL 243
AA GEP PPGP A P P A S PL+
Sbjct: 178 AAPGEPGPKGPPGPPGAPGAPGTPGEPGVPAQSEPLI 214
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSA 228
G + PP P P S P S T PP ++PS+
Sbjct: 149 GATSSAPPPPPPPPPVSVPSSKPTPPPPPPAQQKPSS 185
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 347 AA*GEPFTGSPPGP--VTPAASKPFSPATTANSPPLL 243
AA GEP PPGP A P P A S PL+
Sbjct: 178 AAPGEPGPKGPPGPPGAPGAPGTPGEPGVPAQSEPLI 214
>AF025460-2|AAF02169.3| 545|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 41
protein.
Length = 545
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTAN--------SPPLLRRPSA 228
P G+P TP A+ +PATT+ PP++R PSA
Sbjct: 102 PIVGAPRQGATPQAAPATTPATTSQHQQSIATPKPPVVRPPSA 144
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVGCYG 204
G+P +P P+TP A P PA P +P G G
Sbjct: 202 GQPGQDAPSEPITPGAPGPAGPAGPQGPPGAPGQPGHDGQPGAPG 246
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVGCYG 204
G+P +P P+TP A P PA P +P G G
Sbjct: 202 GQPGQDAPSEPITPGAPGPAGPAGPQGPPGAPGQPGHDGQPGAPG 246
>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
protein ZK512.3 protein.
Length = 1418
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 353 LSAA*GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPS 231
L AA PP + S+P SP+T NS +L PS
Sbjct: 185 LRAATAVKLAHPPPALLIGVPSEPMSPSTYGNSAAILLSPS 225
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
complex protein protein7 protein.
Length = 1217
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSP 252
G P T +PP P T A+ P +P T A++P
Sbjct: 632 GAPKTTAPP-PTTVPATIPVAPTTIASAP 659
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -2
Query: 329 FTGSPPGP-VTPAASKPFSPATTANSPPLLRRP 234
F PP P VT A +PF P T A P RP
Sbjct: 141 FATLPPAPAVTRAPIQPFVPQTVATIAPSFVRP 173
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVGCYG 204
G+P +P P+TP A P PA P +P G G
Sbjct: 202 GQPGQDAPSEPITPGAPGPAGPAGPQGPPGAPGQPGHDGQPGAPG 246
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVGCYG 204
G+P +P P+TP A P PA P +P G G
Sbjct: 202 GQPGQDAPSEPITPGAPGPAGPAGPQGPPGAPGQPGHDGQPGAPG 246
>AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical
protein W10G11.6 protein.
Length = 426
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Frame = -2
Query: 326 TGSPPGPVTPAASKPF-----SPATTANSPPLLRRPSAQPYVGCYGRWQSDAQTHLPWC 165
T +PP VT AA P P +P + P+ VGC W+ + WC
Sbjct: 41 TAAPPVVVTTAAPPPVVVTTAPPVVVVTTPAPVVVPTPAVVVGCLPGWRFTNRPSGGWC 99
>Z70757-7|CAA94803.2| 387|Caenorhabditis elegans Hypothetical
protein ZK287.7 protein.
Length = 387
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 320 SPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVGCYGRW 198
S P P+ P K +PAT +N L R S + GR+
Sbjct: 24 SAPAPLNPKVQKALTPATFSNPNQLARYLSKKVLAHAPGRF 64
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPPLLRR--PSAQPYV 216
P T +PP P A++ +P T +PP R P++QP V
Sbjct: 304 PGTRAPPATRAPPATR--APPATTRAPPATTRPAPASQPPV 342
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 271 AGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 363
AG KG AG GPGG+P P + R G
Sbjct: 173 AGNKG--PAGPPGPGGKPGPAGPPGENGRNG 201
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 323 GSPPGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
GSPP +P P+ SPP RRPS P
Sbjct: 71 GSPPRGARADRDRPMRPSP---SPPRRRRPSPSP 101
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSP 252
G P PPGP PA ++ + A +P
Sbjct: 236 GPPGPAGPPGPAGPAGEDAYAQPSPAGTP 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,624,178
Number of Sequences: 27780
Number of extensions: 197828
Number of successful extensions: 1126
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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