Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1193X
(492 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 46 1e-05
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 46 2e-05
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 44 6e-05
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 41 5e-04
At4g22460.1 68417.m03244 protease inhibitor/seed storage/lipid t... 36 0.015
At5g25550.1 68418.m03040 leucine-rich repeat family protein / ex... 33 0.10
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 33 0.14
At5g38560.1 68418.m04662 protein kinase family protein contains ... 32 0.18
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 31 0.42
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat... 30 0.74
At3g24550.1 68416.m03083 protein kinase family protein contains ... 30 0.74
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 29 1.3
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 29 1.7
At1g23540.1 68414.m02960 protein kinase family protein contains ... 29 1.7
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 2.2
At5g11990.1 68418.m01402 proline-rich family protein contains pr... 28 3.0
At4g28485.1 68417.m04075 hypothetical protein contains Pfam prof... 28 3.0
At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook pr... 28 3.0
At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook pr... 28 3.0
At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook pr... 28 3.0
At2g21230.2 68415.m02521 bZIP family transcription factor contai... 28 3.0
At2g21230.1 68415.m02520 bZIP family transcription factor contai... 28 3.0
At1g26150.1 68414.m03192 protein kinase family protein similar t... 28 3.0
At1g21510.1 68414.m02690 hypothetical protein 28 3.0
At4g02640.2 68417.m00359 bZIP transcription factor family protei... 28 3.9
At4g02640.1 68417.m00358 bZIP transcription factor family protei... 28 3.9
At3g07100.1 68416.m00845 protein transport protein Sec24, putati... 28 3.9
At2g18470.1 68415.m02151 protein kinase family protein contains ... 28 3.9
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 28 3.9
At5g26080.1 68418.m03103 proline-rich family protein contains pr... 27 5.2
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 27 5.2
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 27 5.2
At3g25860.1 68416.m03222 dihydrolipoamide S-acetyltransferase (L... 27 5.2
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 5.2
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 27 5.2
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 27 5.2
At1g10620.1 68414.m01204 protein kinase family protein contains ... 27 5.2
At5g64540.1 68418.m08111 hypothetical protein 27 6.9
At5g16390.2 68418.m01916 biotin carboxyl carrier protein 1 (BCCP... 27 6.9
At5g16390.1 68418.m01915 biotin carboxyl carrier protein 1 (BCCP... 27 6.9
At5g07190.1 68418.m00819 embryo-specific protein 3, putative sim... 27 6.9
At4g16140.1 68417.m02445 proline-rich family protein contains pr... 27 6.9
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 27 6.9
At1g27620.1 68414.m03373 transferase family protein similar to h... 27 6.9
At5g56270.1 68418.m07022 WRKY family transcription factor 27 9.1
At5g48800.1 68418.m06038 phototropic-responsive NPH3 family prot... 27 9.1
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 9.1
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 9.1
At4g30260.1 68417.m04302 integral membrane Yip1 family protein c... 27 9.1
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 46.0 bits (104), Expect = 1e-05
Identities = 17/35 (48%), Positives = 27/35 (77%)
Frame = +2
Query: 98 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 202
++ GTVKWF+ + G+GFI +D +D+FVHQ++I
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSI 47
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 45.6 bits (103), Expect = 2e-05
Identities = 17/35 (48%), Positives = 27/35 (77%)
Frame = +2
Query: 98 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 202
E+ G+VKWF+ + G+GFI +D +D+FVHQ++I
Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSI 43
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 44.0 bits (99), Expect = 6e-05
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +2
Query: 95 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPR 220
A + +G V WFN GYGFI +D ++FVHQ++I R
Sbjct: 8 AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYR 49
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 40.7 bits (91), Expect = 5e-04
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +2
Query: 95 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPR 220
A + G V WF+ GYGFI +D E++FVHQ++I + R
Sbjct: 8 AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFR 49
>At4g22460.1 68417.m03244 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
profile: PF00234 protease inhibitor/seed storage/LTP
family
Length = 133
Score = 35.9 bits (79), Expect = 0.015
Identities = 23/67 (34%), Positives = 33/67 (49%)
Frame = -1
Query: 357 ALVCSIR*AFYWLTTGTSNTSCFKAFLPGNHGKLPASPSPTERTALRGLLRAMAV*CTNT 178
AL+ F+ LTT T +T+C PG H K SP+PT T + L+ C N
Sbjct: 8 ALLLLFNILFFTLTTATRSTNCPPP--PGKHNKQKPSPTPTTGTCPKDALKVGV--CVNA 63
Query: 177 SSLVSFL 157
+L++ L
Sbjct: 64 LNLLNGL 70
>At5g25550.1 68418.m03040 leucine-rich repeat family protein /
extensin family protein similar to leucine-rich
repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana];
contains Pfam PF00560: Leucine Rich Repeat domains
Length = 433
Score = 33.1 bits (72), Expect = 0.10
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 317 PPGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
PP ++P+ S+P +PA + SPPL P A+P
Sbjct: 383 PPSQISPS-SQPLAPAPSPTSPPLSTPPPARP 413
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 32.7 bits (71), Expect = 0.14
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -2
Query: 326 TGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
T SPP P+ P KP P TT PP + P + P VG
Sbjct: 259 TISPP-PLPPQTLKPPPPQTTPPPPPAITPPLSPPLVG 295
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 32.3 bits (70), Expect = 0.18
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 320 SPPGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
SPP PV A+ P +PATT +PP P P
Sbjct: 87 SPPPPVVIASPPPSTPATTPPAPPQTVSPPPPP 119
Score = 30.7 bits (66), Expect = 0.56
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 335 EPFTGSPPGPVTPAASKPFSPATTANSPP 249
+P T S P PVTP S P SP +S P
Sbjct: 28 QPTTPSAPPPVTPPPSPPQSPPPVVSSSP 56
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 320 SPPGPVTPAASKPFSPATTANSPPLLRRPS 231
SPP P TPA + P P T + PP PS
Sbjct: 96 SPP-PSTPATTPPAPPQTVSPPPPPDASPS 124
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 31.1 bits (67), Expect = 0.42
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 320 SPPGPVTPAASKPFSPATTANSPPLLRRP 234
SPPG + P + P SP T+ +PP P
Sbjct: 198 SPPGSMAPKSGSPVSPTTSPPAPPKSTSP 226
>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1073
Score = 30.3 bits (65), Expect = 0.74
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -2
Query: 317 PPGP-VTPAASKPFSPATTANSPP 249
PP P VTP++S+P SP + +SPP
Sbjct: 771 PPKPAVTPSSSRPVSPFSRRSSPP 794
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 30.3 bits (65), Expect = 0.74
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPP 249
P SPP P T +S P SP+T + SPP
Sbjct: 29 PAASSPP-PTTTPSSPPPSPSTNSTSPP 55
Score = 29.9 bits (64), Expect = 0.97
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPP 249
P T SPP P TP S P SP + PP
Sbjct: 85 PITPSPPSPTTP--SNPRSPPSPNQGPP 110
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 353 LSAA*GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
+S A T SP P P S +P A+SPP PS+ P
Sbjct: 1 MSTAPSPGTTPSPSPPSPPTNSTTTTPPPAASSPPPTTTPSSPP 44
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 320 SPPGPVTPAASKPFSPATTANSPPLLRRPS 231
SPPG +TP +P A SPP PS
Sbjct: 68 SPPGSLTPPLPQPSPSAPITPSPPSPTTPS 97
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 323 GSPPGPVTPAASKPFSPATTANSPP 249
GSPP P +P S P T ++PP
Sbjct: 544 GSPPSPSSPTPSSPIPSPPTPSTPP 568
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = -2
Query: 335 EPFTGSPPGPVTPAASKPFSPATT----ANSPPLLRRP 234
EP T +PP VT A KP A T N PP+ +P
Sbjct: 1282 EPITTAPPETVTTTAVKPTENAATERRVTNYPPIRSQP 1319
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
GE + SPP P A P +P+ + PP+ P + P
Sbjct: 5 GESPSSSPPAPPADTAPPPETPSENSALPPVDSSPPSPP 43
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 320 SPPGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
SPP P TP +S P +P + PP P P
Sbjct: 590 SPPPPPTPVSSPPPTPVYSPPPPPPCIEPPPPP 622
>At5g11990.1 68418.m01402 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 181
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQP 222
P PP P P +S P P +SPP L + + P
Sbjct: 51 PSMSPPPSPSLPLSSSPPPPPPHKHSPPPLSQSLSPP 87
>At4g28485.1 68417.m04075 hypothetical protein contains Pfam profile
PF05078: Protein of unknown function (DUF679)
Length = 165
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Frame = -2
Query: 317 PPGPV--TPAASKPFSPATTANSP 252
PP PV +PA+S P++P+ ++SP
Sbjct: 30 PPSPVAGSPASSSPYAPSPASSSP 53
>At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 283 GFEAAGVTGPGGEPVKGSPYAADKRRGYHRQY 378
G E+ G+TG G EPVK KRRG R+Y
Sbjct: 82 GGESGGMTGTGSEPVK-------KRRGRPRKY 106
>At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 283 GFEAAGVTGPGGEPVKGSPYAADKRRGYHRQY 378
G E+ G+TG G EPVK KRRG R+Y
Sbjct: 82 GGESGGMTGTGSEPVK-------KRRGRPRKY 106
>At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 283 GFEAAGVTGPGGEPVKGSPYAADKRRGYHRQY 378
G E+ G+TG G EPVK KRRG R+Y
Sbjct: 82 GGESGGMTGTGSEPVK-------KRRGRPRKY 106
>At2g21230.2 68415.m02521 bZIP family transcription factor contains
a bZIP transcription factor basic domain signature
(PDOC00036)
Length = 460
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPAT 267
PFTG+PP P+ P + PAT
Sbjct: 48 PFTGAPPPPIPPISPYSQIPAT 69
>At2g21230.1 68415.m02520 bZIP family transcription factor contains
a bZIP transcription factor basic domain signature
(PDOC00036)
Length = 519
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPAT 267
PFTG+PP P+ P + PAT
Sbjct: 48 PFTGAPPPPIPPISPYSQIPAT 69
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 335 EPFTGSPPGPV-TPAASKPFSPATTANSPPLLRRPSAQPYVG 213
EP G+PP TPA S P P T +SPP P + G
Sbjct: 44 EPTNGNPPETTNTPAQSSP-PPETPLSSPPPEPSPPSPSLTG 84
>At1g21510.1 68414.m02690 hypothetical protein
Length = 323
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 317 PPGPVTPAASKPFSPATTANS 255
PP PV A+ P P+TT+NS
Sbjct: 71 PPSPVKLASFSPIQPSTTSNS 91
>At4g02640.2 68417.m00359 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 417
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 335 EPFTGSPPGPVTPAASKPFSPATTANSPP 249
+PF +PP P+ P +SKP + + S P
Sbjct: 12 DPFWETPPIPLNPDSSKPVTADEVSQSQP 40
>At4g02640.1 68417.m00358 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 411
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 335 EPFTGSPPGPVTPAASKPFSPATTANSPP 249
+PF +PP P+ P +SKP + + S P
Sbjct: 12 DPFWETPPIPLNPDSSKPVTADEVSQSQP 40
>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
similar to protein transport protein Sec24A
(SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
Length = 1038
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -2
Query: 338 GEPFTGSPP---GPVTPAASKPFSPATTANSPP 249
G P TGS P TP+AS+P P T + PP
Sbjct: 33 GGPPTGSEAVGFRPFTPSASQPTRPFTASGPPP 65
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPPLLRRPS 231
P SPP P P SP + SPP + P+
Sbjct: 30 PPAPSPPSPTPPQGDSSSSPPPDSTSPPAPQAPN 63
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPP 249
P T SPP P TP P PA+ SPP
Sbjct: 743 PVTQSPPPPSTPVEYHP--PASPNQSPP 768
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPF---SPATTANSPPLLRRPSAQPY 219
P+ S P P +P+ P+ SP N PP + P Y
Sbjct: 543 PYIYSSPPPPSPSPPPPYIYSSPPPVVNCPPTTQSPPPPKY 583
>At5g26080.1 68418.m03103 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 141
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/55 (27%), Positives = 20/55 (36%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVGCYGRWQSDAQTHLPW 168
P PP P+ P P T + PP + P+ Q Y R + PW
Sbjct: 84 PIYSPPPPPIYPPPIYS-PPPTPISPPPKVHHPAPQAQKAFYYRQSPPPPSGQPW 137
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Frame = -2
Query: 332 PFTGSPPGPVTPAAS--KPFSPATTANSPPLLRRPSAQPYV 216
P+ PP P TP KP P PP +P PYV
Sbjct: 71 PYIPCPPPPYTPKPPTVKPPPPPYVKPPPPPTVKPPPPPYV 111
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
G P P G P +P +P + N PP RPS P VG
Sbjct: 99 GPPQVSQPGG--FPPVGRPVAPPS--NQPPFGGRPSTGPLVG 136
>At3g25860.1 68416.m03222 dihydrolipoamide S-acetyltransferase
(LTA2) identical to dihydrolipoamide S-acetyltransferase
(LTA2) [Arabidopsis thaliana] GI:5881963
Length = 480
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 317 PPGPVTPAASKPFSPATTANSPPLLRRPSAQPY 219
PP P P +K ATT N PPLL S P+
Sbjct: 236 PPPPPPPVTAK----ATTTNLPPLLPDSSIVPF 264
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.5 bits (58), Expect = 5.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 320 SPPGPVTPAASKPFSPATTANSPPLLRRP 234
+PP PV P + P +P+ + +PP+ P
Sbjct: 73 TPPAPVPPVSPPPPTPSVPSPTPPVSPPP 101
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 332 PFTGSPPGPVTPAASKPFSPATTANSPPLLRRPS 231
P SPP VTP P S T + SPP + PS
Sbjct: 220 PSVPSPPD-VTPTPPTPPSVPTPSGSPPYVPPPS 252
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 329 FTGSPP-GPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
+TG P V P A P S AN P ++P+A P G
Sbjct: 226 YTGIPEQAEVPPVARPPASAGQPANPPAQTQQPAAAPASG 265
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 329 FTGSPP-GPVTPAASKPFSPATTANSPPLLRRPSAQPYVG 213
+TG P V P A P S AN P ++P+A P G
Sbjct: 226 YTGIPEQAEVPPVARPPASAGQPANPPAQTQQPAAAPASG 265
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 335 EPFTGSPPGPVTPAASKPFSPATTANSPP 249
+P SPP P +P PAT A PP
Sbjct: 42 QPPATSPPSPPSPDTQTSPPPATAAQPPP 70
>At5g64540.1 68418.m08111 hypothetical protein
Length = 440
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 308 PVTPAASKPFSPATTANSPPLLRRPSAQPY 219
P TP A+KPF +A L R +A PY
Sbjct: 177 PCTPKAAKPFKLQASAEPFILTPRQAASPY 206
>At5g16390.2 68418.m01916 biotin carboxyl carrier protein 1 (BCCP1)
identical to biotin carboxyl carrier protein of
acetyl-CoA carboxylase precursor [Arabidopsis thaliana]
gi|9759121|dbj|BAB09606
Length = 254
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 314 PGPVTPAASKPFSPATTANSP-PLLRRPSA 228
P P TPA+ P SP T A S P ++ P A
Sbjct: 182 PAPSTPASLPPPSPPTPAKSSLPTVKSPMA 211
>At5g16390.1 68418.m01915 biotin carboxyl carrier protein 1 (BCCP1)
identical to biotin carboxyl carrier protein of
acetyl-CoA carboxylase precursor [Arabidopsis thaliana]
gi|9759121|dbj|BAB09606
Length = 280
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 314 PGPVTPAASKPFSPATTANSP-PLLRRPSA 228
P P TPA+ P SP T A S P ++ P A
Sbjct: 182 PAPSTPASLPPPSPPTPAKSSLPTVKSPMA 211
>At5g07190.1 68418.m00819 embryo-specific protein 3, putative
similar to embryo-specific protein 3 GI:3335171 from
[Arabidopsis thaliana]
Length = 213
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = -2
Query: 326 TGSPPGPVTPAASKP--FSPATTANSPPLLRRPSAQPYVG 213
TG P P P P F P T PP RPSA +G
Sbjct: 151 TGRPSSPDLPPPHFPPEFPPETPTTPPPPPPRPSAASRLG 190
>At4g16140.1 68417.m02445 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 164
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 335 EPFTGSPPGPVTPAASKPFSPATTANSPP 249
+P PP P P+ P SP TTA PP
Sbjct: 42 QPNPSPPPPPSNPSPPPP-SPTTTACPPP 69
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -2
Query: 329 FTGSPPGP-VTPAASKPFSPATTANSPPLLRRPSAQPYVGCYGR 201
F PP P P S+ +PAT + LR + QPY C R
Sbjct: 312 FNNPPPSPHQQPIFSQVVAPATMLSQQTPLRGYNFQPYSMCGSR 355
>At1g27620.1 68414.m03373 transferase family protein similar to
hypersensitivity-related gene product HSR201 - Nicotiana
tabacum, EMBL:X95343; contains Pfam transferase family
domain PF00248
Length = 442
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 439 VLILFCVELLHRLVRHLDEGNIGGGSHGACLQHKVSLLL 323
V +LF V + RL L +G G G AC + KV L+
Sbjct: 282 VKLLFSVNMRKRLTPELPQGYYGNGFVLACAESKVQDLV 320
>At5g56270.1 68418.m07022 WRKY family transcription factor
Length = 687
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 308 PVTPAASKPFSPATTANSPPLLRRPSAQP 222
P +S SPAT SP L P AQP
Sbjct: 110 PCLTISSPGLSPATLLESPVFLSNPLAQP 138
>At5g48800.1 68418.m06038 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 614
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = -3
Query: 343 HKVSLLLAHHRDQ*HQLLQSLSPRQPRQTPRLSFADRAHSLTWVVTGDGSLMHK 182
H LLL HH+ H SL+ + F D +T V G +HK
Sbjct: 5 HHQHLLLQHHQHLHHHQKLSLAKSSRQSCSEWIFRDVPSDITIEVNGGNFALHK 58
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 278 SPATTANSPPLLRRPSAQPYVGCYGRWQSD 189
+PA + S P+ R P AQ C RW D
Sbjct: 65 NPAPASGSDPINRVPLAQVVEDCVRRWFQD 94
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 278 SPATTANSPPLLRRPSAQPYVGCYGRWQSD 189
+PA + S P+ R P AQ C RW D
Sbjct: 65 NPAPASGSDPINRVPLAQVVEDCVRRWFQD 94
>At4g30260.1 68417.m04302 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 280
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -2
Query: 338 GEPFTGSPPGPVTPAASKPFSPATTANSPPL 246
G PP P+ P+ SP +N PPL
Sbjct: 33 GTVLPARPPSPIRPSIPVSSSPFVQSNLPPL 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,246,353
Number of Sequences: 28952
Number of extensions: 184147
Number of successful extensions: 1069
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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