Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1192
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    48   8e-07
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    47   1e-06
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   0.92 
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   2.1  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   2.8  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    25   4.9  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   4.9  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   6.5  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 47.6 bits (108), Expect = 8e-07
 Identities = 22/45 (48%), Positives = 30/45 (66%)
 Frame = +3

Query: 96  KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 230
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R ME
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVME 57



 Score = 30.7 bits (66), Expect = 0.099
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +2

Query: 257 ALKFLKRRLGTHIRAKRKREELSNVLAQMR 346
           A K  K+RLGT  RAK K EEL++V+   R
Sbjct: 67  ARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 22/45 (48%), Positives = 30/45 (66%)
 Frame = +3

Query: 96  KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 230
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R ME
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVME 57



 Score = 30.7 bits (66), Expect = 0.099
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +2

Query: 257 ALKFLKRRLGTHIRAKRKREELSNVLAQMR 346
           A K  K+RLGT  RAK K EEL++V+   R
Sbjct: 67  ARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 309 SVKNLATCSLR*GRQPPRLITITI 380
           SVKNL   SL+    PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 373 MVMSLGGCLPHLSEHVAKFFTLPLGADVCA 284
           +V SL G    L +  A+FFT PL ++VCA
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCA 573


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +2

Query: 182  STRSCRTRSI*EEGY---GVT*GVKRQGALKFLKRRLGTHIR 298
            +TR+C T+S+ EEG+    V+  +KR+     LK R+   ++
Sbjct: 928  ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARIKDKVK 969


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 126 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 230
           RPA L+ L+T  SKFV  +    V    Y K  ++
Sbjct: 27  RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 241 TLSNSIALFSY*ACPTTSRTKSRTNLECF 155
           T+++S  LF+  A   T+ TKS  N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +2

Query: 272 KRRLGTHIRAKRKREELSNVLAQM 343
           K+RL  +I  K K+EE+++++A++
Sbjct: 89  KKRLDKYIENKLKKEEVASLIAKL 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,752
Number of Sequences: 5004
Number of extensions: 24030
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)