Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1192
         (425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...    49   2e-06
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     48   4e-06
07_03_0078 - 13147741-13148913                                         30   0.68 

>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 29/67 (43%), Positives = 36/67 (53%)
 Frame = +3

Query: 30  PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 209
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR L+REVVG A 
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55

Query: 210 YEKRAME 230
           YEKR  E
Sbjct: 56  YEKRITE 62



 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 20/34 (58%), Positives = 27/34 (79%)
 Frame = +2

Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMR 346
           K + ALK  KR+LGTH RAK+KREE++ V+ +MR
Sbjct: 68  KDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 28/67 (41%), Positives = 36/67 (53%)
 Frame = +3

Query: 30  PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 209
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR+L+REV G A 
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55

Query: 210 YEKRAME 230
           YEKR  E
Sbjct: 56  YEKRITE 62



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 21/34 (61%), Positives = 27/34 (79%)
 Frame = +2

Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMR 346
           K + ALK  KR+LGTH RAK+KREE++ VL +MR
Sbjct: 68  KDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 133 AGLILMALSVIPLRPADILVVLWPF 59
           AGL+  AL VIP  P  + +V WPF
Sbjct: 71  AGLLYFALVVIPALPGVLRLVAWPF 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,630,314
Number of Sequences: 37544
Number of extensions: 164844
Number of successful extensions: 369
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)