Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1192
         (425 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)              60   1e-09

>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
          Length = 100

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 33/63 (52%), Positives = 39/63 (61%)
 Frame = +3

Query: 42  IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 221
           +AVGL+KGHK TK             + +P+R KG   K  KFVRD+VREVVG A YEKR
Sbjct: 1   MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50

Query: 222 AME 230
            ME
Sbjct: 51  VME 53



 Score = 53.6 bits (123), Expect = 7e-08
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +2

Query: 245 KRQGALKFLKRRLGTHIRAKRKREELSNVLAQMRK 349
           K + ALKF K+RLGTH+R KRKREE+++VLA MRK
Sbjct: 59  KDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,208,218
Number of Sequences: 59808
Number of extensions: 203648
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)